View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_52 (Length: 230)
Name: NF19189_low_52
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 40618110 - 40618307
Alignment:
| Q |
18 |
gaaatatacttcgtctgatctcaaatataagcgacaaaaatccaagttgtttcttcnnnnnnnnnnnnnnnncaagttgttgaggaacaagctagttcat |
117 |
Q |
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| T |
40618110 |
gaaatatacttcgtctgatctcaaatataagcgacaaaaaaccaagttgtttcttcaaaaaaacaaaaaaaccaagttgttgaggaacaagctagttcat |
40618209 |
T |
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| Q |
118 |
gacactcttgttggttatatatatagtaaaatcttaactaatctgaccctgttaaattggtgattataatgaatctttactttgcattgtttacctttgc |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40618210 |
gacactcttgttggttata----tagtaaaatcttaactaatctgaccctgttaaattggtgattataatgaatctttactttgcattgtttacctttgc |
40618305 |
T |
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