View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_53 (Length: 222)
Name: NF19189_low_53
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38452916 - 38452715
Alignment:
| Q |
1 |
aaggggttcagtttttccactcatcattgatgagcgtaatccatatgcatatggaatgcttcctttttcacttttaactcatatcaacttcatgtctgta |
100 |
Q |
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| T |
38452916 |
aaggggttcagtttttccactcatcattgatgagcgtaatccatatgcatatggaatgcttcttttttcacttttaactcatatcaacttcatgtctgta |
38452817 |
T |
|
| Q |
101 |
gtgactatgaatattagtttcaactttcaacttattcaggatgattagagatagataaaacagaaatatgaataattaaataggaagaaagaacgtgata |
200 |
Q |
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| T |
38452816 |
gtgactatgattattaatttcaactttcaacttattcaggatgattagagatagataaaacagaaatatgaataattaaataggaagaaagaacgtgata |
38452717 |
T |
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| Q |
201 |
gg |
202 |
Q |
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|| |
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| T |
38452716 |
gg |
38452715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 39849830 - 39849885
Alignment:
| Q |
67 |
ttcacttttaactcatatcaacttcatgtctgtagtgactatgaatattagtttcaactt |
126 |
Q |
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| T |
39849830 |
ttcacttttgactcatatcaacttcatgtctgaag----tatgattattagtttcaactt |
39849885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 44475656 - 44475732
Alignment:
| Q |
125 |
tttcaacttattcaggatgattagagatagataaaac---agaaatatgaataattaaataggaagaaagaacgtga |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
44475656 |
tttcaacttattcaggatgattagagatagataaaacataataaatatgaataattaaataggaagaaagaatgtga |
44475732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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