View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19189_low_9 (Length: 397)
Name: NF19189_low_9
Description: NF19189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19189_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 41124212 - 41123822
Alignment:
| Q |
6 |
aataagatgaaaagagtatatatcaaatggcttattgttt-aggtgaagatatactctccaaaccaaaccactcatctataattgctcttagccaagcaa |
104 |
Q |
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| T |
41124212 |
aataagatgaaaagagtatatatcaaatgacttattgttttaggtgaagatatactctccaaaccaaaccactcatctataattgctcttagccaagcaa |
41124113 |
T |
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| Q |
105 |
aactatcacatcatatcacttggcaaca---------------aacaactgtctcgtttaaacaatgaattaaaatgagataaaactagggtgaaaggag |
189 |
Q |
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| T |
41124112 |
aactatcacatcatatcacttggcaacagctcagaaaactacaaacaactgtctcgtttaaacaatgaattaaaatgagataaaactagggt-aagggag |
41124014 |
T |
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| Q |
190 |
aaagagtagtgtgtgtagaaacttagcaaaaaagatatagagaaacttatggcaacggtaattagggagcataaccctatttttaaagatgttttcaaca |
289 |
Q |
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| T |
41124013 |
aaagagtagtgtgtgtagaaacttagcaaaaaagatatagagaaacttatggcaacggtaattagggagcataaccctatttttaaagatgttttcaaca |
41123914 |
T |
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| Q |
290 |
acaaattaggagtgattgagcaccaatgagagccatgagaagaagtacaataattgtcttccctatcgctatagatgttggaaacttaaaaa |
381 |
Q |
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| T |
41123913 |
acaaattaggagtgattgagcaccaatgagagccatgagaagaagtacaataattgtcttccctatggctatagatgttggaaacttaaaaa |
41123822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 46453454 - 46453377
Alignment:
| Q |
243 |
aacggtaattagggagcataaccctatttttaaagatgttttcaacaac-aaattaggagtgattgagcaccaatgag |
319 |
Q |
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| T |
46453454 |
aacggtaattagggagcatagccatattttttaaaatgacttcaacaacaaaatttggagtgatcgaccaccaatgag |
46453377 |
T |
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