View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_1 (Length: 692)
Name: NF1918_high_1
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 20 - 675
Target Start/End: Original strand, 21019152 - 21019805
Alignment:
| Q |
20 |
tattggagtttgagtaagttaaaaatcacgtcatgtcatgtctttactatgagtggtgttcgaatcctcgggaatgtttgattaggtaacagtcggtttt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21019152 |
tattggagtttgagtaagttaaaaatcacgtcatgtc-----tttactatgagtggtgttggaatcctcgggaatgtttgattaggtaacagtcggtttt |
21019246 |
T |
|
| Q |
120 |
ggtggagtttagtggcagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacggctgctgtgctgctgttaactgtttttggtggctgg |
219 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21019247 |
ggtggagttttgtggcagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacggctgctgtgctgctgttatctgtttttggtggctgg |
21019346 |
T |
|
| Q |
220 |
cagtatggttttgttgctgcagattgtcctggtgcggtgctgttctgttagtttggagctttgccttgtaactgctttgtagnnnnnnnnngggttgggt |
319 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21019347 |
cagtatggttttgttgctgcagattgtgctggtgcggtgctgttctgttagtttggagctttgccttgtaactgctttgtagtttttttttgggttgggt |
21019446 |
T |
|
| Q |
320 |
gtgtagtgtaagggttgccctgtactactgata---ggggccttggctgtttgttcttttcgttttcggctccattcttctcttcttgagagttttggat |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21019447 |
gtgtagtgtaagggttgccctgtactactgatacgtggggccttggctgtttgttcttttcgttttcggctccattcttctcttcttgagagttttggat |
21019546 |
T |
|
| Q |
417 |
gcattaataatatttgctattataaaaaatatatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaat |
516 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21019547 |
gcattaataatatttgctattaaaaaaaaaatatgtttgcagctttcacatcacggtgaataatcttaggagggtcataactataatgcaagtaagcaat |
21019646 |
T |
|
| Q |
517 |
ccccctggcagatcccagtgcaatattcttcggcattgtccagtcaagcggaggttgagagtcattacgttctacaacaacagaatcaatatacatagac |
616 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21019647 |
ccccctggcagatcccactgcaatattcttccgcattgtccagtcaagcggaggttgagagtcattacgttctacaacaacagaatcaatatacatagtc |
21019746 |
T |
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| Q |
617 |
gcggttttattagtttgaaactggaacttttgaaattcaacattaagagcattaatttg |
675 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21019747 |
gcggttttattagtttgaaactggaacttttgaaattcaacattaagagcattaatttg |
21019805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 447 - 675
Target Start/End: Complemental strand, 1435974 - 1435752
Alignment:
| Q |
447 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
546 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
1435974 |
atatatttgcagctttcacatcacggtgaataatcttagg---gtcacaactataatgcaagtaagcaatccccctggcagatcccaacgcaatattttt |
1435878 |
T |
|
| Q |
547 |
cggcattgtccagtcaagcggaggttgagagtcattacgttctacaacaacagaatcaatatacatagacgcggttttattagtttgaaactggaacttt |
646 |
Q |
| |
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| |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1435877 |
ccgcattggccactcaagcggaggttgagagccattacgttctacaacaacagaatcaatatacatagacgcggtt---ttagtttgaaactggaacttt |
1435781 |
T |
|
| Q |
647 |
tgaaattcaacattaagagcattaatttg |
675 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
1435780 |
tgaaattcaacattaagagcattaatttg |
1435752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 447 - 615
Target Start/End: Complemental strand, 1448797 - 1448632
Alignment:
| Q |
447 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
546 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||| ||||||||||| ||| || ||||||||||| |
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|
| T |
1448797 |
atatatttgcagctttcacatcacgatgaataatcttagg---gtcacaatgatcatgcaagtaagcaagccccctggcagctcctagcgcaatattctt |
1448701 |
T |
|
| Q |
547 |
cggcattgtccagtcaagcggaggttgagagtcattacgttctacaacaacagaatcaatatacataga |
615 |
Q |
| |
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| |||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
1448700 |
ccgcattggccagtcaagcggcggttgagagtcattacgttctacaaaaacacaatcaatatacataga |
1448632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 458 - 590
Target Start/End: Complemental strand, 1441382 - 1441253
Alignment:
| Q |
458 |
gctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttcggcattgtcc |
557 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| || |||||||||||||| ||||||||||| |||||| |||||||||||| |||||| || |
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|
| T |
1441382 |
gctttcacatcacgatgaataatcttagg---gtcacaatgatcatgcaagtaagcaagccccctggcagctcccagcgcaatattcttccgcattggcc |
1441286 |
T |
|
| Q |
558 |
agtcaagcggaggttgagagtcattacgttcta |
590 |
Q |
| |
|
| |||||||| || ||||||||||||||||||| |
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| T |
1441285 |
actcaagcggcggctgagagtcattacgttcta |
1441253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 447 - 607
Target Start/End: Complemental strand, 1429364 - 1429207
Alignment:
| Q |
447 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
546 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
1429364 |
atatatttgcagctttcacatcacgatgaataatcttagg---gtcacagtgatcatgcaagtaagcaagccctctggcagatcccagtgcaatattctt |
1429268 |
T |
|
| Q |
547 |
cggcattgtccagtcaagcggaggttgagagtcattacgttctacaacaacagaatcaata |
607 |
Q |
| |
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| |||||| ||| |||||||| || | | || ||||||||||||||| || |||||||| |
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|
| T |
1429267 |
ccgcattggccactcaagcggcggatcaacctcgttacgttctacaacatcaaaatcaata |
1429207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 458 - 658
Target Start/End: Complemental strand, 1455542 - 1455348
Alignment:
| Q |
458 |
gctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttcggcattgtcc |
557 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||| || |||||||||||| | |||| |||||| |||||| ||||||||||| ||||| || |
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|
| T |
1455542 |
gctttcacatcacgatgaataaccttagga---tcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttcctcattggcc |
1455446 |
T |
|
| Q |
558 |
agtcaagcggaggttgagagtcattacgttctacaacaacagaatcaatatacatagacgcggttttattagtttgaaactggaacttttgaaattcaac |
657 |
Q |
| |
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| ||||| || ||||||||| |||||||||||||||||||| || |||||||||||| | ||| || || |||||||| || |||||||||||||| |
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| T |
1455445 |
aatcaagtggcggttgagaggcattacgttctacaacaacaaaaagaatatacatagatggagttataata---tgaaactgcaaattttgaaattcaac |
1455349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 34468733 - 34468695
Alignment:
| Q |
64 |
tactatgagtggtgttcgaatcctcgggaatgtttgatt |
102 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
34468733 |
tactatgagtggtgttggaaccctcgggaatgtttgatt |
34468695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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