View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_high_13 (Length: 446)

Name: NF1918_high_13
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_high_13
NF1918_high_13
[»] chr1 (24 HSPs)
chr1 (182-430)||(27654657-27654905)
chr1 (182-430)||(16130404-16130656)
chr1 (182-430)||(40987960-40988209)
chr1 (180-430)||(16129848-16130106)
chr1 (182-430)||(5800330-5800578)
chr1 (183-429)||(34546702-34546949)
chr1 (263-430)||(9411779-9411948)
chr1 (182-398)||(27846418-27846637)
chr1 (234-430)||(1553767-1553965)
chr1 (193-405)||(35050208-35050422)
chr1 (218-430)||(36834287-36834495)
chr1 (182-378)||(45192466-45192663)
chr1 (208-426)||(23933236-23933457)
chr1 (183-405)||(30222768-30222992)
chr1 (261-430)||(27332910-27333080)
chr1 (189-357)||(35428426-35428598)
chr1 (182-378)||(4813645-4813842)
chr1 (182-395)||(13878945-13879161)
chr1 (202-378)||(11907981-11908158)
chr1 (183-338)||(35121292-35121446)
chr1 (183-254)||(9412285-9412356)
chr1 (358-430)||(35121222-35121293)
chr1 (304-430)||(41957262-41957390)
chr1 (339-375)||(26961167-26961203)
[»] chr3 (18 HSPs)
chr3 (182-430)||(46320485-46320735)
chr3 (182-430)||(35612910-35613161)
chr3 (183-415)||(48905527-48905761)
chr3 (198-415)||(9663814-9664030)
chr3 (183-430)||(22515690-22515941)
chr3 (177-430)||(50834058-50834312)
chr3 (177-430)||(50841541-50841795)
chr3 (180-429)||(23026174-23026427)
chr3 (183-405)||(26848053-26848277)
chr3 (182-430)||(20922665-20922916)
chr3 (182-430)||(54748042-54748291)
chr3 (281-430)||(25313415-25313566)
chr3 (183-430)||(25095895-25096128)
chr3 (182-430)||(49794860-49795098)
chr3 (183-254)||(30363802-30363873)
chr3 (186-252)||(25313559-25313625)
chr3 (183-227)||(9663769-9663813)
chr3 (205-272)||(33280086-33280153)
[»] chr5 (9 HSPs)
chr5 (182-429)||(24868519-24868768)
chr5 (182-430)||(40385126-40385379)
chr5 (182-430)||(3097440-3097692)
chr5 (183-430)||(41174553-41174802)
chr5 (182-430)||(33314380-33314629)
chr5 (182-286)||(21262494-21262598)
chr5 (282-430)||(21262890-21263039)
chr5 (302-397)||(4237936-4238033)
chr5 (205-430)||(2934804-2935031)
[»] chr4 (11 HSPs)
chr4 (183-430)||(27627804-27628052)
chr4 (183-430)||(30537524-30537772)
chr4 (183-430)||(782844-783093)
chr4 (183-430)||(3067779-3068026)
chr4 (182-430)||(26877214-26877466)
chr4 (182-430)||(36187370-36187620)
chr4 (183-430)||(43034023-43034271)
chr4 (181-430)||(25934392-25934648)
chr4 (182-316)||(22651745-22651878)
chr4 (183-430)||(50150212-50150458)
chr4 (228-382)||(33313329-33313486)
[»] chr2 (20 HSPs)
chr2 (182-430)||(39778542-39778794)
chr2 (176-429)||(25186990-25187245)
chr2 (186-429)||(10700120-10700365)
chr2 (182-430)||(42993697-42993947)
chr2 (193-430)||(10728196-10728435)
chr2 (182-430)||(13693422-13693671)
chr2 (9-180)||(9577307-9577478)
chr2 (182-430)||(28831009-28831258)
chr2 (182-430)||(19926679-19926927)
chr2 (183-415)||(7105619-7105853)
chr2 (190-430)||(36191475-36191717)
chr2 (183-430)||(21344974-21345220)
chr2 (182-405)||(41435501-41435726)
chr2 (182-317)||(41462799-41462934)
chr2 (182-430)||(11964202-11964437)
chr2 (234-405)||(10448794-10448967)
chr2 (182-272)||(22066290-22066380)
chr2 (352-430)||(41462717-41462795)
chr2 (302-430)||(22066388-22066517)
chr2 (303-371)||(16621988-16622056)
[»] chr7 (10 HSPs)
chr7 (183-429)||(23319869-23320117)
chr7 (183-405)||(7568072-7568296)
chr7 (182-430)||(18674555-18674804)
chr7 (183-430)||(48390213-48390462)
chr7 (183-405)||(24989789-24990013)
chr7 (180-430)||(48394052-48394303)
chr7 (182-416)||(41850906-41851143)
chr7 (198-405)||(45062531-45062740)
chr7 (307-430)||(8417710-8417834)
chr7 (198-291)||(8417889-8417982)
[»] scaffold0008 (1 HSPs)
scaffold0008 (182-430)||(258217-258458)
[»] chr6 (3 HSPs)
chr6 (193-429)||(7243319-7243557)
chr6 (182-430)||(1365696-1365946)
chr6 (183-429)||(24337909-24338153)
[»] chr8 (11 HSPs)
chr8 (183-430)||(32305759-32306008)
chr8 (192-429)||(35634693-35634932)
chr8 (191-430)||(8106945-8107185)
chr8 (182-430)||(8669785-8670034)
chr8 (182-430)||(13882137-13882385)
chr8 (186-430)||(29226328-29226572)
chr8 (198-405)||(37533842-37534052)
chr8 (182-430)||(42569953-42570205)
chr8 (183-291)||(45177496-45177605)
chr8 (205-405)||(36741610-36741815)
chr8 (192-254)||(27420143-27420205)
[»] scaffold0067 (1 HSPs)
scaffold0067 (198-429)||(6755-6990)
[»] scaffold0057 (2 HSPs)
scaffold0057 (205-428)||(30463-30688)
scaffold0057 (205-372)||(30741-30910)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 27654905 - 27654657
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  27654905 atactccctccgatcctttatataagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctata 27654806  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataaa 381  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  27654805 tttaagaaaattccattaaaacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaa 27654706  T
Q  382 aattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | ||||||||||| |||||| ||| |||  |||||||||||||||||||    
T  27654705 atttaacttcaaagatacttaaaacttgatcaatatttcttataaaaag 27654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 16130404 - 16130656
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||| |    
T  16130404 atactccctccggtcctttatacaagaaacaaaagagataaaacatcaagatcaaggaaatacattgaaaatagttatcttcatttaatacacctctaca 16130503  T
Q  282 ttt--aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaa 377  Q
    |||  || |||| ||||| || |||| ||||||||||||| ||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  16130504 tttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaa 16130603  T
Q  378 taaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  16130604 tgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 16130656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 40987960 - 40988209
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | || |||||||||||||| |||| |    
T  40987960 atacttcctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctaca 40988059  T
Q  282 tttaagaaaa-ttccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataa 380  Q
    ||||| |||| ||| || || ||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  40988060 tttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaacttacttacttttaatattctctcataataaataagggcacaaatga 40988159  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    || |||  ||||||||||||| ||| |||| |||||||||||||||||||    
T  40988160 aatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaag 40988209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 180 - 430
Target Start/End: Original strand, 16129848 - 16130106
Alignment:
Q  180 acatactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttcta 279  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||||| | ||    
T  16129848 acatactccctccggtcctttatacaagaaacaaaagacataaaacatcaaaatcaaggaaatacattgaaaatagttatcttcatttaatacaccttta 16129947  T
Q  280 tatttaagaaaat------tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataaggg 371  Q
     |||||| ||||       ||||| || |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||  ||||||||||||||||    
T  16129948 catttaaaaaaaaaaaaaatccatgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataaggg 16130047  T
Q  372 cacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||||| ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  16130048 cacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 16130106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 5800330 - 5800578
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||    
T  5800330 atactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttctata 5800429  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaata 379  Q
    || || |||||| ||| || ||||||||||||||| |||||||||| || |||||||||||||||||| |  ||||||||||||||||||| |||||||     
T  5800430 ttaaaaaaaatt-catgaatacccctaaattaatttctctttattccactaacttatttacttttaattttctctctcataataaataaggacacaaatg 5800528  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||| ||||  |||||||||||||    
T  5800529 aaatttatcttcaaacatacttgaaacttggtcaat-cttcttataaaaag 5800578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 183 - 429
Target Start/End: Complemental strand, 34546949 - 34546702
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | || |||||||||| ||| | || ||    
T  34546949 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatgcacctttacat 34546850  T
Q  283 tt--aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataa 380  Q
    ||  || |||| | ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||      
T  34546849 ttaaaaaaaaaattcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctcataataaataagggcagaaat-g 34546751  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    |||||| |||||||||||||| ||| |||  |||||||| |||||||||    
T  34546750 aaattagcttcaaacatacttaaaacttgatcaatattttttataaaaa 34546702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 263 - 430
Target Start/End: Complemental strand, 9411948 - 9411779
Alignment:
Q  263 catttaatacacttctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcata 360  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  |||||||    
T  9411948 catttaatacacttctatacttaagaaaattccattaacacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcata 9411849  T
Q  361 ataaataagggcacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    |||||||||||||||| | ||| ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  9411848 ataaataagggcacaagtgaaatttaacttcaaatatacttgaaacttggtcaatatttcttataaaaag 9411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 182 - 398
Target Start/End: Complemental strand, 27846637 - 27846418
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| | || ||||||||||||||||||| |    
T  27846637 atactccctctggtcccttatacaagaaacaaaagacataaaacatcaggaccaaggaaatactttgaaaatagttatcttcatttaatacacttctaca 27846538  T
Q  282 tttaagaa-aattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    ||||| || |||||||| || | || ||||||||||||| | ||||| ||||||||| |||||||||||||  |||||||||||||||||||| ||||||    
T  27846537 tttaaaaacaattccatgaatatccttaaattaattactatctattccaccaacttacttacttttaatattatctctcataataaataagggtacaaat 27846438  T
Q  379 aaaaattaacttcaaacata 398  Q
     ||| |||||||||||||||    
T  27846437 gaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 1553965 - 1553767
Alignment:
Q  234 caaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaa 333  Q
    |||| |||||||||||||||| | |  ||||||||||||||||||| |||||| ||||||| || || |||| ||||||||||||||||||||| | |||    
T  1553965 caagaaaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaattctataaatacccttaaattaattactctttattccatcaa 1553866  T
Q  334 cttatttacttttaatattc--tctcataataaataagggcacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    |||| |||||||||||||||  ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||  ||||| |||||||||||||    
T  1553865 cttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaag 1553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 193 - 405
Target Start/End: Original strand, 35050208 - 35050422
Alignment:
Q  193 ggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaat 292  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | || ||||||||||||||||||| |||||| ||||     
T  35050208 ggtcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaa 35050307  T
Q  293 tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataaaaattaactt 390  Q
       ||  | |||| ||||||||||||||||||||  | ||||||| |||||||||||||  ||||||||||| ||||||| ||||||| ||| ||| |||    
T  35050308 aatatgtatacccttaaattaattactctttatttcatcaacttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagctt 35050407  T
Q  391 caaacatacttgaaa 405  Q
    || ||||||||||||    
T  35050408 cagacatacttgaaa 35050422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 218 - 430
Target Start/End: Complemental strand, 36834495 - 36834287
Alignment:
Q  218 cataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaacacccctaaattaatta 317  Q
    ||||||| ||||||| ||| |||||||||| |||||| | || || |||||||||||||||| |||||| |||||| ||| || |||  |||||||||||    
T  36834495 cataaaatatcaagaccaaagaaatacattaaaaatagtcatctttatttaatacacttctacatttaa-aaaatttcatgaatacc--taaattaatta 36834399  T
Q  318 ctctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataaaaattaacttcaaacatacttgaaatttggacaatat 417  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||| |||||||||||||||||||||   |||| |    
T  36834398 ctctttattccaccaacttacttacttttaatattctcttataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaat-t 36834300  T
Q  418 ttcttataaaaag 430  Q
    |||||||||||||    
T  36834299 ttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 182 - 378
Target Start/End: Original strand, 45192466 - 45192663
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||| ||||||||  |||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| | || ||||||||||| ||||||| |    
T  45192466 atacttcctccggttctttatacaagaaacaaaagacataaa-catcaacatcaagaaaatacattgaaaatagtcatcttcatttaatatacttctaca 45192564  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaat 378  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||| | ||||||| ||| |||||||||||  ||||||||| ||||||  |||||||    
T  45192565 tttaaaaaaattccatgaatacccttaaattaattactctttattccatcaacttacttatttttaatattctgtctcataattaataagaacacaaat 45192663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 208 - 426
Target Start/End: Original strand, 23933236 - 23933457
Alignment:
Q  208 aaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaacacccct 307  Q
    |||||||||||||||| |||||||| |||  |||||||||||||||||| || ||| ||||||| || |||| ||||||     || ||| || ||||||    
T  23933236 aaacaaaagacataaatcatcaagaccaaaaaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttcatgaatacccct 23933335  T
Q  308 aaattaattactctttattctaccaacttatttactttt-aatattctctcata--ataaataagggcacaaataaaaattaacttcaaacatacttgaa 404  Q
    ||||||||||||||| |||||||||||||  ||| |||| ||||||||||||||  |||||||||||||||||| ||| ||||||||||||| | |||||    
T  23933336 aaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaacacatttgaa 23933435  T
Q  405 atttggacaatatttcttataa 426  Q
    | |||| |||| ||| ||||||    
T  23933436 aattggtcaatgtttattataa 23933457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 183 - 405
Target Start/End: Complemental strand, 30222992 - 30222768
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||  |||||| || ||||||||||||||||| ||||| | |||| |||||||||||||||| | || ||||||||||| ||||||| ||    
T  30222992 tactccctccggttctttatataaaaaacaaaagacataaaatatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatatacttctacat 30222893  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcacaaataa 380  Q
    |||| |||| |  || || | || |||||||||||||||||| || | ||||||| |||||||||||||||||  ||||||| ||||||  ||||||| |    
T  30222892 ttaaaaaaagtatatgaatatccttaaattaattactctttaatccatcaacttacttacttttaatattctctttcataatcaataagaacacaaatga 30222793  T
Q  381 aaattaacttcaaacatacttgaaa 405  Q
    |  ||| | ||||||||| ||||||    
T  30222792 attttagcatcaaacatatttgaaa 30222768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 27332910 - 27333080
Alignment:
Q  261 ttcatttaatacacttctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaata--ttctctca 358  Q
    |||||||||||||||||||||||||| ||||||| || || |||| ||||||||||||||||||||| |  |||||| ||||||||||||  ||||||||    
T  27332910 ttcatttaatacacttctatatttaaaaaaattctataaatacccttaaattaattactctttattccattaacttacttacttttaatattttctctca 27333009  T
Q  359 taataaataagggcacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    |||| |||||||| |||||| ||| ||| |||||||||||||| ||| |||  ||||  |||||||||||||    
T  27333010 taatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaat-cttcttataaaaag 27333080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 189 - 357
Target Start/End: Complemental strand, 35428598 - 35428426
Alignment:
Q  189 ctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaaga 288  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| | || ||||||||| || ||||||||||| | |    
T  35428598 ctccggtcatttataaaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaacacgcttctatattttaaa 35428499  T
Q  289 aaattccattaacacccctaaattaattactctttat----tctaccaacttatttacttttaatattctctc 357  Q
    || ||  || || |||| |||||||||||||||||||    || | ||||||| ||||||||||| |||||||    
T  35428498 aatttttatgaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctc 35428426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 182 - 378
Target Start/End: Original strand, 4813645 - 4813842
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| |||||| ||||||||||| ||||||| ||  |||| |||||||||||||| |||||| | || |||||||||||||| |||  |    
T  4813645 atactccctccggtcctttatataagaaacaaaatacataaatca--aagaccaaggaaatacattaaaaatagttatcttcatttaatacacctctcca 4813742  T
Q  282 tttaagaaaatt-ccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaat 378  Q
    |||||  |  || |||| || |||  ||||||||||||| || |||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  4813743 tttaaatagttttccatgaatacctttaaattaattacttttcattccaccaacttacttacttttaatattccttctcataataaataagggcacaaat 4813842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 395
Target Start/End: Original strand, 13878945 - 13879161
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatc-aagatcaaggaaatacattgaaaataataatattcatttaatacact---tc 277  Q
    ||||||||||  ||| |||||||||||||||||| |||||||||||| || | |||||||||||||    |||| | || |||||||||||||||   ||    
T  13878945 atactccctcgagtcttttatacaagaaacaaaa-acataaaacatcgaaaaccaaggaaatacat----aatagtcatcttcatttaatacactacttc 13879039  T
Q  278 tatatttaagaaaat---tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggc 372  Q
    || |||||| ||||    | ||| || |||  ||||||||||||||||| ||| ||||||||||||||| |||||||||  |||||||||||||||||||    
T  13879040 tacatttaaaaaaaaaaattcatgaatacct-taaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggc 13879138  T
Q  373 acaaataaaaattaacttcaaac 395  Q
    |||||| ||| ||| ||| ||||    
T  13879139 acaaatgaaatttagctttaaac 13879161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 378
Target Start/End: Complemental strand, 11908158 - 11907981
Alignment:
Q  202 tacaagaaacaaaaga-cataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaa 300  Q
    |||||||||||||| | |||||| ||| ||||||||| ||||||||||||||| |  || ||||||||||||   | || ||||||     |||||| ||    
T  11908158 tacaagaaacaaaaaaacataaatcattaagatcaagaaaatacattgaaaatgactattttcatttaatacttctgtacatttaaatttcttccatgaa 11908059  T
Q  301 cacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaat 378  Q
     |||  || ||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||| | |||||||    
T  11908058 tacctttacattaattactcttgattccaccaacttatttatttttaatactctctcataataaataaagacacaaat 11907981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 338
Target Start/End: Complemental strand, 35121446 - 35121292
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||||||| | |  |||||||||| ||||| | || ||||||||||||||||| | ||    
T  35121446 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaaga-ctaaaaaatacattggaaatagtcatcttcatttaatacacttc-acat 35121349  T
Q  283 tt-aagaaaattccattaacacccctaaattaattactctttattctaccaacttat 338  Q
    || || |||| | ||| || |||| |||||||||| |||||||||| || |||||||    
T  35121348 ttaaaaaaaaattcatgaatacccttaaattaattcctctttattccactaacttat 35121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 9412356 - 9412285
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaata 254  Q
    ||||||||||| |   |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  9412356 tactccctccgattccttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaata 9412285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 35121293 - 35121222
Alignment:
Q  358 ataataaataagggcacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||||||| |||| ||||  |||||||||||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaat-cttcttataaaaag 35121222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 430
Target Start/End: Original strand, 41957262 - 41957390
Alignment:
Q  304 ccctaaattaattactctttattctaccaacttatttacttttaatattct--ctcataataaataagggcacaaataaaaattaacttcaaacatactt 401  Q
    ||||| ||||||||||||| |||  |||||   | ||||||||||||||||  ||||||||| | ||||| || ||  ||||||||| || | || | ||    
T  41957262 ccctatattaattactcttgattacaccaaaagacttacttttaatattctttctcataatacaaaagggtaccaacgaaaattaacatctagcacattt 41957361  T
Q  402 gaaatttggacaatatttcttataaaaag 430  Q
    |||| ||||  ||||||||||||||||||    
T  41957362 gaaaattggtgaatatttcttataaaaag 41957390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 26961167 - 26961203
Alignment:
Q  339 ttacttttaatattctctcataataaataagggcaca 375  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  26961167 ttacttttaatattctctcctaataaataaggtcaca 26961203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 46320735 - 46320485
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  46320735 atactccctccggtcctttatacaagaaacaacagacataaaacatcaagaccaaagaaatacattgaaaatagtaatattcatttaatacacctctata 46320636  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
    ||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||||||||||||| ||||||     
T  46320635 tttaagaaacttccattaacacccctaaattaattactctttatttcaccaacttacttacttttaatattctctctcataataaataagggtacaaatg 46320536  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| |||||||||||||||||| ||| |||| |||||||||||||||||||    
T  46320535 aaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaag 46320485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 35612910 - 35613161
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| | || |||||||||||||| |||| |    
T  35612910 atactccctccagtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctaca 35613009  T
Q  282 ttt-aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    ||| || |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  35613010 tttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataaataagggcacaaat 35613109  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  35613110 gaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 35613161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 183 - 415
Target Start/End: Original strand, 48905527 - 48905761
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | || ||||||||||||| ||||| ||    
T  48905527 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 48905626  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    |||| |||||| ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||| |    
T  48905627 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 48905726  T
Q  381 aaattaacttcaaacatacttgaaatttggacaat 415  Q
    || ||| |||||||||||||||||| |||| ||||    
T  48905727 aatttaccttcaaacatacttgaaacttggtcaat 48905761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 198 - 415
Target Start/End: Original strand, 9663814 - 9664030
Alignment:
Q  198 tttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccat 297  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| ||||| |||||| |||||| |||    
T  9663814 tttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcat 9663913  T
Q  298 taacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataaaaattaacttcaaacat 397  Q
     || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  9663914 gaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttaccttcaaacat 9664013  T
Q  398 acttgaaatttggacaat 415  Q
     ||||||| |||| ||||    
T  9664014 -cttgaaacttggtcaat 9664030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 183 - 430
Target Start/End: Complemental strand, 22515941 - 22515690
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttc--tat 280  Q
    ||||||||| | || |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| | || |||||||||||||| ||  ||     
T  22515941 tactccctctgatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatacattgaaaatagttatcttcatttaatacacctcaatac 22515842  T
Q  281 atttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    |||||| |||||||||| || |  | ||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  22515841 atttaaaaaaattccataaatattcttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 22515742  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| ||||| |||||||||||| |||| |||||||||||||||||||    
T  22515741 gaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaag 22515690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 177 - 430
Target Start/End: Complemental strand, 50834312 - 50834058
Alignment:
Q  177 atgacatactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacactt 276  Q
    |||| |||||||||| | || |||||||||||||||||||||||||||||||| ||  ||||||||| |||||||||| | || ||||||||||| |  |    
T  50834312 atgaaatactccctc-gatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatct 50834214  T
Q  277 ctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcac 374  Q
    ||| |||||| |||| ||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||| |||||||||    
T  50834213 ctacatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcac 50834114  T
Q  375 aaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    |||| ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  50834113 aaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 50834058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 177 - 430
Target Start/End: Original strand, 50841541 - 50841795
Alignment:
Q  177 atgacatactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacactt 276  Q
    |||| |||||||||| | || |||||||||||||||||||||||||||||||| ||  ||||||||| |||||||||| | || ||||||||||| |  |    
T  50841541 atgaaatactccctc-gatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatct 50841639  T
Q  277 ctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcac 374  Q
    ||| |||||| |||| ||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||| |||||||||    
T  50841640 ctacatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcac 50841739  T
Q  375 aaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    |||| ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  50841740 aaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 50841795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 180 - 429
Target Start/End: Original strand, 23026174 - 23026427
Alignment:
Q  180 acatactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttcta 279  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | || |||||||||||||  ||||    
T  23026174 acatactccctccgatcctttatacaagaaacaaaagacataaaatatcaggatcaaagaaatacattgaaaatagttatcttcatttaatacatctcta 23026273  T
Q  280 tatttaagaaaattc--cattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcaca 375  Q
     |||||| ||||     ||| ||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||| ||||||||||||    
T  23026274 catttaaaaaaaaaaatcatgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcaca 23026373  T
Q  376 aataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    ||| ||| |||||||||||||||||||||||||   ||||||||||||||||||    
T  23026374 aatgaaatttaacttcaaacatacttgaaattttatcaatatttcttataaaaa 23026427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 183 - 405
Target Start/End: Original strand, 26848053 - 26848277
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| | |||  |||||||||||||||| | || ||||||||||||||||||| |     
T  26848053 tactccctccgatcttttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacag 26848152  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    |||| ||||||| || ||||||| ||||||||||||||||||||| | ||||||| |||||||||||||  ||||||||||| ||||||||||||||  |    
T  26848153 ttaaaaaaattctatgaacacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaaaga 26848252  T
Q  381 aaattaacttcaaacatacttgaaa 405  Q
    || ||| ||||||||||||||||||    
T  26848253 aatttagcttcaaacatacttgaaa 26848277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 20922665 - 20922916
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| | ||  |||||||||||||||||||| | || |||||||||||||| |||| |    
T  20922665 atactccctccggtcctttatacaaaaaacaaaagacataaaacattaggactaaggaaatacattgaaaatatttatcttcatttaatacacctctaca 20922764  T
Q  282 ttt-aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    ||| || |||| || || || | |||||||||||||| | ||||||| ||||||||| |||||||||||||  |||||||||||||||||| ||||||||    
T  20922765 tttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaacttacttacttttaatattctctctcataataaataagagcacaaat 20922864  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| ||||||  |||||||||| |||| |||||||||||||||||||    
T  20922865 gaaatttagcttcaagaatacttgaaacttggtcaatatttcttataaaaag 20922916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 54748291 - 54748042
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||||||||  || ||||||||| ||||||||||||||||||||||| | |||| |||||| ||||||||| | || ||||||||||||||||||| |    
T  54748291 atactccctccaatcctttatacaataaacaaaagacataaaacatcaacaccaagaaaatacgttgaaaatagttatcttcatttaatacacttctaca 54748192  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
    ||||| ||||||  || || |||| ||||||||||||||||||||| | ||| ||| |||||||||||||||  ||||||||| |||||||||||||||     
T  54748191 tttaaaaaaattatatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatg 54748092  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||  ||||  |||||||||||||    
T  54748091 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 54748042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 281 - 430
Target Start/End: Complemental strand, 25313566 - 25313415
Alignment:
Q  281 atttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctc--ataataaataagggcacaaat 378  Q
    |||||| ||||||| || || |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  25313566 atttaaaaaaattctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 25313467  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  25313466 gaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 25313415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 25095895 - 25096128
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| | || ||||||||||||| ||||||      
T  25095895 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatacatttctat-- 25095992  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
                 || || |||| ||||||||||||||||||||| | ||| ||| |||||||||||||  ||||||||||| ||||||||||||||| |    
T  25095993 -------------atgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatga 25096079  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    || ||| ||||||||||||||||||||||  ||||  |||||||||||||    
T  25096080 aatttagcttcaaacatacttgaaatttgatcaat-cttcttataaaaag 25096128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 49794860 - 49795098
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||| | || |||||||||||||||||||||||||||||||||||||| ||           |||||||| | || |||||||||||||| |||| |    
T  49794860 atactccttgcgatcatttatacaagaaacaaaagacataaaacatcaagacca-----------tgaaaatagttatcttcatttaatacacctctaca 49794948  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaata--ttctctcataataaataagggcacaaata 379  Q
    |||||     || ||| || |||||| ||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||||||| | ||||||     
T  49794949 tttaattttttttcatgaataccccttaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagagtacaaatg 49795048  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||| ||||||||||||| |||  |||||||||||||||||||    
T  49795049 aaatttagcttc-aacatacttgaaacttgatcaatatttcttataaaaag 49795098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 30363802 - 30363873
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaata 254  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  30363802 tactctctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaagaaaatacattgaaaata 30363873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 25313625 - 25313559
Alignment:
Q  186 tccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaa 252  Q
    |||||||| || |||||||||||||||||||||||||||||||| || |||  ||||||||| ||||    
T  25313625 tccctccgatcttttatacaagaaacaaaagacataaaacatcaggaccaaaaaaatacatttaaaa 25313559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 9663769 - 9663813
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacat 227  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  9663769 tactccctccgatcctttatacaagaaacaaaagacataaaacat 9663813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 33280086 - 33280153
Alignment:
Q  205 aagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatac 272  Q
    |||||| |||| ||||||| |||||||||||| |||| |||||||||| | || | ||||||||||||    
T  33280086 aagaaaaaaaatacataaaccatcaagatcaatgaaaaacattgaaaaaattatttttcatttaatac 33280153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 182 - 429
Target Start/End: Complemental strand, 24868768 - 24868519
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||||||   ||| |||||||||||||||| |||| |||||||||||||| ||||||    
T  24868768 atactccatccgatcctttatacaagaaacaaaagacataaaacatcaagtctaagaaaatacattgaaaatagtaatcttcatttaatacacctctata 24868669  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||| ||||||     
T  24868668 attaagaaaattccattaacacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggtacaaatg 24868569  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    ||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  24868568 aaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaa 24868519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 40385126 - 40385379
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| | || ||||||||||||||||||| |    
T  40385126 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaagaccaaagatatacattgaaaatagtcatcttcatttaatacacttctaca 40385225  T
Q  282 tttaagaaa-attccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    ||||| ||| | ||||| || ||||||||||||||| |||||||||| || |||||||||||||||||| |  |||||||||||||||||||||||||||    
T  40385226 tttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataagggcacaaat 40385325  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatat--ttcttataaaaag 430  Q
     ||| ||| |||||||||||||||||| |||| |||| |  |||||||||||||    
T  40385326 gaaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaag 40385379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 3097440 - 3097692
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |    
T  3097440 atactccctccggtcctttatacaagaaacata-gacataaaacatcaagatcaaggaaatacattgaaaatagtaatcttcatttaatacacttctaca 3097538  T
Q  282 ttt----aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatatt--ctctcataataaataagggcaca 375  Q
    |||    || |||| |||||  | ||||||||||||| | |||||||||| || |||||||||||||||||| ||  |||||||||||||||||||||||    
T  3097539 tttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattccactaacttatttacttttaattttcactctcataataaataagggcaca 3097638  T
Q  376 aataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| ||| |||||||||||||||||| |||| ||||  |||||||||||||    
T  3097639 aatgaaatttagcttcaaacatacttgaaacttggtcaat-cttcttataaaaag 3097692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 41174553 - 41174802
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata- 281  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||     
T  41174553 tacttcctccggtcctttatgcaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatatacttctatat 41174652  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaa--tattctctcataataaataagggcacaaata 379  Q
    ||||| |||| | ||| || |||||| |||||||| |||||||||  || |||||||||||||||||  |  |||||||||||||||||||||||||||     
T  41174653 tttaaaaaaaattcatgaatacccctcaattaattcctctttatttcactaacttatttacttttaactttctctctcataataaataagggcacaaatg 41174752  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| ||| ||| |||||||||| |||| ||||  |||||||||||||    
T  41174753 aaatttagcttaaaatatacttgaaacttggtcaat-cttcttataaaaag 41174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 33314629 - 33314380
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||| |||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  | || ||||||||||||| ||||| |    
T  33314629 atactacctccgatcctttatacaagaaacaaaatacataaaacatcaagaccaaggaaatacattgaaaatggtcatcttcatttaatacatttctaca 33314530  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
     |||| |||||| ||| || |  ||||||||||||||||||||||| ||||||||  |||||||||||||||  ||||||||||||| |||||||||||     
T  33314529 cttaaaaaaatttcatgaatattcctaaattaattactctttattccaccaacttgcttacttttaatattctctctcataataaatgagggcacaaatg 33314430  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| ||||||||||| |||||| |||  ||||  |||||||||||||    
T  33314429 aaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaag 33314380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 21262494 - 21262598
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||| | |||| |||||||||||||||| | || |||||||||||| |||||| |    
T  21262494 atactacctccggtcctttataaaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctaca 21262593  T
Q  282 tttaa 286  Q
    |||||    
T  21262594 tttaa 21262598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 430
Target Start/End: Original strand, 21262890 - 21263039
Alignment:
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaata 379  Q
    ||||| ||||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||||||||  ||||||||||| |||| |||| |||||     
T  21262890 tttaaaaaaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatg 21262989  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||  ||||  |||||||||||||    
T  21262990 aaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 21263039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 4238033 - 4237936
Alignment:
Q  302 acccctaaattaattactctttattctaccaacttatttacttttaatattct--ctcataataaataagggcacaaataaaaattaacttcaaacat 397  Q
    ||||||||||||||||||||| |||| ||||| ||| ||  ||||| ||||||  |||||||||||||| ||||||||| ||| ||||||||||||||    
T  4238033 acccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaaacat 4237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 430
Target Start/End: Original strand, 2934804 - 2935031
Alignment:
Q  205 aagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataa-taatattcatttaatacacttctatatttaagaaaattccattaacac 303  Q
    ||||||||||| | ||||  ||| || || ||||||||||||| ||||||| | ||||||||||||||||  |||| |||||| |   || ||| || ||    
T  2934804 aagaaacaaaataaataagtcatgaaaattaaggaaatacatt-aaaataagttatattcatttaatacatctctacatttaa-attttttcataaatac 2934901  T
Q  304 ccctaaattaattactctttattctaccaacttatttactttt-aatat--tctctcataataaataagggcacaaataaaaattaacttcaaacatact 400  Q
     ||||||||||||||| || ||||   ||| |||||||||||| ||||   |||||||||||||||||||| | |||| ||| ||||||||||| | |||    
T  2934902 tcctaaattaattacttttgattccggcaatttatttactttttaataacctctctcataataaataagggtataaatgaaatttaacttcaaatacact 2935001  T
Q  401 tgaaatttggacaatatttcttataaaaag 430  Q
    | ||| ||||  ||| ||||||||||||||    
T  2935002 taaaaattggtaaatctttcttataaaaag 2935031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 183 - 430
Target Start/End: Complemental strand, 27628052 - 27627804
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||||||||||| | ||||| ||    
T  27628052 tactcccttcggttctttatacaagaaacaaaagacataaaacatcaggatcaaggaaatacattgaaaatagttatcttcatttaatatatttctacat 27627953  T
Q  283 ttaagaaaa-ttccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataaa 381  Q
    |||| |||| || ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  27627952 ttaaaaaaaattacatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaa 27627853  T
Q  382 aattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  27627852 atttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 27627804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 30537524 - 30537772
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| ||    
T  30537524 tactacctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 30537623  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    |||| ||  || ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||| |    
T  30537624 ttaaaaatttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 30537723  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    || ||| |||||||||||||||||| |||| ||||  |||||||||||||    
T  30537724 aatttagcttcaaacatacttgaaacttggtcaat-cttcttataaaaag 30537772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 183 - 430
Target Start/End: Complemental strand, 783093 - 782844
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || || ||||||||||  |||| ||    
T  783093 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatctt-atttaatacatctctacat 782995  T
Q  283 ttaagaaa-attccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaata 379  Q
    |||| ||| ||||||| || |||||||||||||||| ||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||      
T  782994 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaaag 782895  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  782894 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 782844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 183 - 430
Target Start/End: Complemental strand, 3068026 - 3067779
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| ||    
T  3068026 tactccctccggtcctttatacaataaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctacat 3067927  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    || |||||| | ||| || ||| |||||||||||  |||||||||||| |||||||||||||||||| |  ||||||||||||||||||||||||||| |    
T  3067926 tt-agaaaaattcatgaatacctctaaattaattcttctttattctactaacttatttacttttaattttctctctcataataaataagggcacaaatga 3067828  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    || ||| |||||||||||||||||| |||| ||||  |||||||||||||    
T  3067827 aatttagcttcaaacatacttgaaacttggtcaat-cttcttataaaaag 3067779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 26877466 - 26877214
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | || |||| ||||||||| |||| |    
T  26877466 atactccctccggtcctttatacaagaaacaaaagatataaaacatcaagaccaaggaaatacattgaaaatagttatcttcagttaatacacctctaca 26877367  T
Q  282 tttaagaaaattc--cattaacacccctaaattaattactctttattctaccaacttatttacttttaatattct--ctcataataaataagggcacaaa 377  Q
    ||||| ||||     ||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||| ||||||    
T  26877366 tttaaaaaaaaaaatcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaa 26877267  T
Q  378 taaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | ||| ||| |||||||||||||| |||||||| |||||||||||||||||||    
T  26877266 tgaaatttagcttcaaacatacttaaaatttggtcaatatttcttataaaaag 26877214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 36187620 - 36187370
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | || || ||||||||||  |||| |    
T  36187620 atactccctccggtcttttatacaagaaacaaaagacataaaacatcaagaccaagaaaatacattgaaaatagttatctt-atttaatacatctctaca 36187522  T
Q  282 tttaagaaa-attccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    ||||| ||| ||||||| || |||||||||||||||| ||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  36187521 tttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 36187422  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| ||||||| |||||||||| ||||  ||||||||||||||||||    
T  36187421 gaaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaag 36187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 43034023 - 43034271
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| | |||| || ||||||||||||| | || ||||||||||||||||||| ||    
T  43034023 tactccctccggtcctttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctacat 43034122  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    |||| | ||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||||||||  ||||||||||| ||||||||||||||| |    
T  43034123 ttaaaataattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatga 43034222  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    || ||| ||||||||||| |||||| |||  ||||  |||||||||||||    
T  43034223 aatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaag 43034271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 181 - 430
Target Start/End: Complemental strand, 25934648 - 25934392
Alignment:
Q  181 catactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctat 280  Q
    |||||| |||| | || |||||||||||||||||||||||||||||||||||  || ||||||||||||||||| | || ||||||||||||||||||||    
T  25934648 catacttcctctgatcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagtcatcttcatttaatacacttctat 25934549  T
Q  281 attt-------aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctc--ataataaataaggg 371  Q
    ||||       || ||||   ||| || |||| |||||||||| |||||||||| || |||||||||| ||||||| |||||||  ||||||||||||||    
T  25934548 attttaaaaaaaaaaaaaaatcatgaataccc-taaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataaggg 25934450  T
Q  372 cacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||||| ||| ||| |||||||||||||||||| |||| ||||  |||||||||||||    
T  25934449 cacaaatgaaatttatcttcaaacatacttgaaacttggtcaat-cttcttataaaaag 25934392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 22651745 - 22651878
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  22651745 atactccctccagtcctttatacaagaaacaaaagacataaaacatcgagaccaaagaaatacattgaaaataatcatcttcttttaatacacttctata 22651844  T
Q  282 tttaagaaaattccattaacacccctaaattaatt 316  Q
    ||||| |||| || || || |||||||||||||||    
T  22651845 tttaa-aaaaatctatgaatacccctaaattaatt 22651878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 50150212 - 50150458
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||| |||||| || ||||||||||||||||||||| ||||| || || |  ||| |||||||||||||||||| || |||||||||||  |||||| ||    
T  50150212 tacttcctccgctcctttatacaagaaacaaaagac-taaaatattaaaactaagaaaatacattgaaaataatcatcttcatttaatatgcttctacat 50150310  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    |||| |||| || |  || |||| ||||||||||||| ||||||| | ||||||| |||||||||||||  ||||||||||| ||||||| ||||||| |    
T  50150311 ttaa-aaaactctaggaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaataaggacacaaatga 50150409  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    || ||| |||||||||||||| ||| |||  ||||  |||||||||||||    
T  50150410 aatttagcttcaaacatacttaaaacttgatcaat-cttcttataaaaag 50150458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 382
Target Start/End: Complemental strand, 33313486 - 33313329
Alignment:
Q  228 caagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaat-tccattaacacccctaaattaattactctttatt 326  Q
    ||||| ||| |||||||||| |||||| | || |||||||||||||||| ||||||||| ||||  | ||| || | || ||||||||||  ||||||||    
T  33313486 caagaccaaagaaatacattaaaaatagtcatcttcatttaatacacttttatatttaaaaaaaaattcatgaatatccataaattaattcatctttatt 33313387  T
Q  327 ctaccaacttatttacttttaatattctctc--ataataaataagggcacaaataaaa 382  Q
    | || |||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  33313386 ccactaacttatttacttttaattttctctctcataataaataagggcacaaataaaa 33313329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 39778542 - 39778794
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||| |||| |    
T  39778542 atactccctccggtcctttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatcttcatttaatacacctctaca 39778641  T
Q  282 ttt--aagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaa 377  Q
    |||  || |||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  39778642 tttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaa 39778741  T
Q  378 taaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  39778742 tgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 39778794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 176 - 429
Target Start/End: Complemental strand, 25187245 - 25186990
Alignment:
Q  176 aatgacatactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacact 275  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | || ||||||||||||||     
T  25187245 aatgacatactccctctggtcctttatacaagaaacaaaagacataaaacattaggaccaaggaaatacattgaaaatagttatcttcatttaatacacc 25187146  T
Q  276 tctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggca 373  Q
    |||| |||||| |||||||||| || | || |||||||||||||||| |||| ||||||||| |||||||||||||||  ||||||||||||||||||||    
T  25187145 tctacatttaaaaaaattccatgaatatccttaaattaattactcttaattccaccaacttacttacttttaatattctctctcataataaataagggca 25187046  T
Q  374 caaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    ||||| ||| ||| ||||| |||||||||||| |||| ||||||||||||||||||    
T  25187045 caaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaa 25186990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 186 - 429
Target Start/End: Original strand, 10700120 - 10700365
Alignment:
Q  186 tccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatattta 285  Q
    ||||||||||| |||||| ||||||||||| || |||||||||| || ||||||||||||||||||||| | || |||||||||||||| |||| |||||    
T  10700120 tccctccggtcttttatataagaaacaaaaaacgtaaaacatcaggaccaaggaaatacattgaaaatagttattttcatttaatacacctctacattta 10700219  T
Q  286 agaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataaaaa 383  Q
    | |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||||| |||     
T  10700220 aaaaaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaatattctctctcataataagtaagggcacaaatgaaat 10700319  T
Q  384 ttaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    ||| ||||| |||||||||||| |||| ||||||||||||||||||    
T  10700320 ttagcttcagacatacttgaaacttggtcaatatttcttataaaaa 10700365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 42993697 - 42993947
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaa-gacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctat 280  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||    
T  42993697 atactccctccggtcctttatacaagaaacaaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttctat 42993796  T
Q  281 atttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    ||||||  ||| ||||| || ||||||||||||||| |||||||||| || |||||||||||||||||| |  |||||||||| ||||||||||||||||    
T  42993797 atttaaataaaatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataacaaataagggcacaaat 42993896  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| ||||||||||||||||||||||| ||||  |||||||||||||    
T  42993897 gaaatttatcttcaaacatacttgaaatttggtcaat-cttcttataaaaag 42993947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 193 - 430
Target Start/End: Original strand, 10728196 - 10728435
Alignment:
Q  193 ggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaat 292  Q
    |||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | || |||| ||||||||| |||| |||||| ||||     
T  10728196 ggtcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaa 10728295  T
Q  293 tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataaaaattaactt 390  Q
    | ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||| |||| ||| ||| |||    
T  10728296 ttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcataaatgaaatttagctt 10728395  T
Q  391 caaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||||||||||||| || | |||||||||||||||||||    
T  10728396 caaacatacttgaaactttgtcaatatttcttataaaaag 10728435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 13693422 - 13693671
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  13693422 atactctcttcggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctata 13693521  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaata 379  Q
    ||||| |||  | ||| || ||||||||||||||| |||||||||| || |||||||||||||||||| |  ||||||||||||||||||| || ||||     
T  13693522 tttaaaaaatattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctctctcataataaataaggacagaaatg 13693621  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| ||| |||||||||||||| |||| ||||  |||||||||||||    
T  13693622 aaatttatctttaaacatacttgaaacttggtcaat-cttcttataaaaag 13693671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 9577307 - 9577478
Alignment:
Q  9 attattctattcaaactcaagttctttcaaatgatttatcctttaataaaactcattaaccgctcaattcgagtcacttaatttattaatatatacacat 108  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9577307 attattctattcaaattcaagttctttcgaatgatttatcctttgataaaactcattaactgctcaattcgagtcacttaatttattaatatatacacat 9577406  T
Q  109 atttttaatggcgttgccttaactttaatgnnnnnnnagagaaaaaggtgtcagatgtgctgaaactaatga 180  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||    
T  9577407 atttttaatggcgttgccttaactttaatgtttttttagagaaaaaggtgtcaaatgtgctgaaactaatga 9577478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 28831258 - 28831009
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||| ||||||||||||||||| | || |||||||||||||| ||||      
T  28831258 atactccctccggtcctttatacaagacacaaaagatataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacg 28831159  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatatt--ctctcataataaataagggcacaaata 379  Q
    ||| | |||| || || || |||||||||||||||||||||||||  ||||| ||| ||||||||||||||  |||||||||||||||||| |||||||     
T  28831158 ttttaaaaaaatc-atgaatacccctaaattaattactctttattgcaccaatttacttacttttaatattttctctcataataaataaggacacaaatg 28831060  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| |||||||||||||||||| |||||||| |||||||||||||||||||    
T  28831059 aaatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaag 28831009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 19926679 - 19926927
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| | || |||||||||||||| ||||      
T  19926679 atactccctccggtcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctact 19926778  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataaa 381  Q
    |||        | ||  || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  19926779 tttttttcttcttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaa 19926878  T
Q  382 aattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | |||  ||||||||||||| ||| |||| |||||||||||||||||||    
T  19926879 atttagtttcaaacatacttaaaacttggtcaatatttcttataaaaag 19926927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 415
Target Start/End: Complemental strand, 7105853 - 7105619
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| | || ||||||||||||| ||||| ||    
T  7105853 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaataaatacattgaaaatagtcatcttcatttaatacatttctacat 7105754  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaata--ttctctcataataaataagggcacaaataa 380  Q
    ||||     || ||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||  |||||||||||||||||||||||||||| |    
T  7105753 ttaaatttttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcacaaatga 7105654  T
Q  381 aaattaacttcaaacatacttgaaatttggacaat 415  Q
    || ||| |||||| ||||||||||| |||| ||||    
T  7105653 aatttaccttcaagcatacttgaaacttggtcaat 7105619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 190 - 430
Target Start/End: Original strand, 36191475 - 36191717
Alignment:
Q  190 tccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatattt--aag 287  Q
    ||||||| |||||||||||||||||||||||||||||| | || |||| |||||||||||||||| | || || ||||||||||| |||||||||  ||     
T  36191475 tccggtcctttatacaagaaacaaaagacataaaacat-aggaccaagaaaatacattgaaaatagttatctttatttaatacacctctatatttcaaaa 36191573  T
Q  288 aaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcacaaataaaaatt 385  Q
    ||||   |||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||  ||||||||||||||||||||||| ||| ||    
T  36191574 aaaaaatcattaatacccctaaattaattactctttattccac-aacttacttacttttaatattctctctcataataaataagggcacaaatgaaattt 36191672  T
Q  386 aacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    | |||||||||||||||||| || | |||||||||||||||||||    
T  36191673 agcttcaaacatacttgaaacttagtcaatatttcttataaaaag 36191717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 21344974 - 21345220
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| | || |||||||| |||||||||| ||    
T  21344974 tactccctccagtcctttatacaagaaacaaaagacataaaacatcaagaccaaaaaaatacattgaaaatagtcatcttcatttattacacttctacat 21345073  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaataaaa 382  Q
    |||| | ||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||||||  ||||||| ||| ||||||| ||||||| |||    
T  21345074 ttaaaacaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaattctctctcacaatcaataaggacacaaatgaaa 21345173  T
Q  383 attaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| |||||||||||||||||| |||  ||||  |||||||||||||    
T  21345174 tttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 21345220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 182 - 405
Target Start/End: Original strand, 41435501 - 41435726
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||||| | |||| |||| ||||||||||| | || ||||||||||||||||||| |    
T  41435501 atactccctccggtcctttatataagaaacaaaaaacataaaacatcaacaccaagaaaatgcattgaaaatagtcatcttcatttaatacacttctaca 41435600  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
    |||||     || ||| || |||| ||||||||||||||||||||  | |||||||||||||||||||||||  ||||||||| |||||||||||||||     
T  41435601 tttaattttttttcatgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatctcataatcaataagggcacaaatg 41435700  T
Q  380 aaaattaacttcaaacatacttgaaa 405  Q
    ||| ||| ||||||||||||||||||    
T  41435701 aaatttagcttcaaacatacttgaaa 41435726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 182 - 317
Target Start/End: Complemental strand, 41462934 - 41462799
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  |||| |||||||||||||| ||||||    
T  41462934 atactccttccggtcctttatacaagaaacaacagacataaaacatcaagatcaaggaaatatattgaaaatggtaatcttcatttaatacacctctata 41462835  T
Q  282 tttaagaaaattccattaacacccctaaattaatta 317  Q
    |||||||||||| |||||||||| ||||||| ||||    
T  41462834 tttaagaaaatttcattaacacctctaaatttatta 41462799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 11964437 - 11964202
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||| | ||||           |||||| | || ||||||||||||||||||| |    
T  11964437 atactccctccggtcctttatacaagaaacaaaagaca--aaacatcaacaccaag-----------aaaatagtcatcttcatttaatacacttctaca 11964351  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
    ||||| ||||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||||||||||  ||||||||| |||||||||||||||     
T  11964350 tttaa-aaaattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatg 11964252  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| ||||||||||| |||||| |||  ||||  |||||||||||||    
T  11964251 aaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaag 11964202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 405
Target Start/End: Complemental strand, 10448967 - 10448794
Alignment:
Q  234 caaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaacacccctaaattaattactctttattctaccaa 333  Q
    |||| ||||| |||||||||| | || ||||||||||||||||||| |||||| ||| ||  || || |||| ||||||||||||| ||||||| | |||    
T  10448967 caagaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaagttatatgaatacccttaaattaattactatttattccatcaa 10448868  T
Q  334 cttatttacttttaatattc--tctcataataaataagggcacaaataaaaattaacttcaaacatacttgaaa 405  Q
    |||| |||||||||||||||  ||||||||| |||||| |||||||| ||| ||||||||||||||||||||||    
T  10448867 cttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaa 10448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 22066290 - 22066380
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatac 272  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| | || ||||||||||||    
T  22066290 atactccctcctgtcctttatacaagaaacaaaagacataaaacatcaacatcaataaaatacattgaaaatagtcatcttcatttaatac 22066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 41462795 - 41462717
Alignment:
Q  352 tctctcataataaataagggcacaaataaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| || ||| |||| |||||||||||||||||||    
T  41462795 tctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaag 41462717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 430
Target Start/End: Original strand, 22066388 - 22066517
Alignment:
Q  302 acccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcacaaataaaaattaacttcaaacatac 399  Q
    |||| ||||||||||||| ||||||| | ||||| | |||||||||||||||||  ||||||| ||||||||||||||| ||| ||| ||| ||||||||    
T  22066388 acccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaacatac 22066487  T
Q  400 ttgaaatttggacaatatttcttataaaaag 430  Q
    |||||| |||  ||||  |||||||||||||    
T  22066488 ttgaaacttgatcaat-cttcttataaaaag 22066517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 16621988 - 16622056
Alignment:
Q  303 cccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataaggg 371  Q
    |||||| |||||||||||||  ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  16621988 cccctatattaattactcttatttctaccaacttacttatttttaatattctctcataataaataaggg 16622056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 183 - 429
Target Start/End: Original strand, 23319869 - 23320117
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| | || ||| |||||||||| |||| ||    
T  23319869 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaattacattgaaaatagttatcttcgtttaatacacctctacat 23319968  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataa 380  Q
    |||| ||| |||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||| |    
T  23319969 ttaaaaaatttccatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 23320068  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    || ||| |||||||||||||||||| |||| ||||||||||||||||||    
T  23320069 aatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 23320117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 183 - 405
Target Start/End: Original strand, 7568072 - 7568296
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| ||||| ||    
T  7568072 tactccctccggtcctttgtacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 7568171  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcacaaataa 380  Q
    |||| |||||| ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||||||| |    
T  7568172 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctttcataataaataagggcacaaatga 7568271  T
Q  381 aaattaacttcaaacatacttgaaa 405  Q
    || ||| ||||||||||||||||||    
T  7568272 aatttaccttcaaacatacttgaaa 7568296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 18674804 - 18674555
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | || ||||||||||||| ||||| |    
T  18674804 atactacctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaatatagtcatcttcatttaatacatttctaca 18674705  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctc--ataataaataagggcacaaata 379  Q
    ||||| |||||| ||| || |||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||  |||||||||||||||||||||     
T  18674704 tttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttacttattttcaatattctctcttataataaataagggcacaaatg 18674605  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||| |||| ||||||||||||||    
T  18674604 aaatttagcttcaaacatacttgaaacttggtcaat-tttcttataaaaag 18674555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 48390213 - 48390462
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||  |||| ||    
T  48390213 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagttatctt-atttaatacatctctacat 48390311  T
Q  283 ttaagaaa-attccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattct--ctcataataaataagggcacaaata 379  Q
    |||| ||| ||||||| || |||||||||||||||| | ||||||  | ||||||| ||||||||||||||||  |||||||||||||||| |||||||     
T  48390312 ttaaaaaatattccatgaatacccctaaattaattattttttatttcatcaacttacttacttttaatattctcactcataataaataaggacacaaatg 48390411  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  48390412 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 48390462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 183 - 405
Target Start/End: Complemental strand, 24990013 - 24989789
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| || | |||| ||||||||| |||||| | || ||||||||||||||||||| ||    
T  24990013 tactccttccggtcttttatacaagaaacaaaagacataaaacattaataccaagaaaatacatttaaaatagtcatcttcatttaatacacttctacat 24989914  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaataa 380  Q
    |||| ||||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||||||||||  ||||||||| ||||||||||||||| |    
T  24989913 ttaaaaaaattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatga 24989814  T
Q  381 aaattaacttcaaacatacttgaaa 405  Q
    || ||| ||||||||||||||||||    
T  24989813 aatttagcttcaaacatacttgaaa 24989789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 180 - 430
Target Start/End: Original strand, 48394052 - 48394303
Alignment:
Q  180 acatactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttcta 279  Q
    |||||||||||||| || ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| | || |||||||||||||| ||||    
T  48394052 acatactccctccgatcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctcta 48394151  T
Q  280 tatttaagaaaat-tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctcataataaataagggcacaaat 378  Q
      |||       | | ||  || |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  48394152 cttttttcttcttcttcaagaatacccctaaattaattactctttattccaccaacttacttacttttaatattctttcataataaataagggcacaaat 48394251  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| |||  ||||||||||||| ||| |||| |||||||||||||||||||    
T  48394252 gaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaag 48394303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 182 - 416
Target Start/End: Original strand, 41850906 - 41851143
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||  | || |||||||||||||| |||| |    
T  41850906 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaattgttatcttcatttaatacacctctaca 41851005  T
Q  282 tttaagaaaattcc-attaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaat 378  Q
    |||||     ||   || || |||||||||||||||||||||||||| ||||||| | |||||||||||||  |||||||||||||||||||| ||||||    
T  41851006 tttaaatttttttttatgaatacccctaaattaattactctttattccaccaactcacttacttttaatattctctctcataataaataagggtacaaat 41851105  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaata 416  Q
     ||| |||  ||||||||||||||||| |||| |||||    
T  41851106 gaaatttagtttcaaacatacttgaaacttggtcaata 41851143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 198 - 405
Target Start/End: Complemental strand, 45062740 - 45062531
Alignment:
Q  198 tttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccat 297  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | || |||||||||||||||| || |||||| ||||||| ||    
T  45062740 tttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttttacatttaaaaaaattctat 45062641  T
Q  298 taacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaataaaaattaacttcaaac 395  Q
     || |||| ||||||||||||| ||||||| | ||||||| |||||||||||||||  ||||||||| || ||||||||| || ||| ||| ||| ||||    
T  45062640 gaatacccttaaattaattactttttattccatcaacttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagctttaaac 45062541  T
Q  396 atacttgaaa 405  Q
    ||| ||||||    
T  45062540 atatttgaaa 45062531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 430
Target Start/End: Complemental strand, 8417834 - 8417710
Alignment:
Q  307 taaattaattactctttattctaccaacttatttacttttaatatt--ctctcataataaataagggcacaaataaaaattaacttcaaacatacttgaa 404  Q
    ||||||||||||||||||||| | ||||||| ||||||||||||||  |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  8417834 taaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaa 8417735  T
Q  405 atttggacaatatttcttataaaaag 430  Q
    | |||  ||||  |||||||||||||    
T  8417734 acttgatcaat-cttcttataaaaag 8417710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 8417982 - 8417889
Alignment:
Q  198 tttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaa 291  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||| | |||||||||||||||||||||| |||||| ||||    
T  8417982 tttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattaaaaatattcatattcatttaatacacttctacatttaaaaaaa 8417889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 182 - 430
Target Start/End: Original strand, 258217 - 258458
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  258217 atactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctata 258316  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaata 379  Q
    |||||||||||||||| |||||||||||||||||||||||          |||||| ||| |||||||||  ||||||||||||||||| |||||||||     
T  258317 tttaagaaaattccatcaacacccctaaattaattactct---------aaacttacttaattttaatattctctctcataataaataaaggcacaaatg 258407  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| |||||||||||||||||| ||| |||| |||||||||||||||||||    
T  258408 aaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaag 258458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 193 - 429
Target Start/End: Original strand, 7243319 - 7243557
Alignment:
Q  193 ggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaat 292  Q
    |||| ||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| | || |||||||||||||| |||| |||||| ||||     
T  7243319 ggtcctttatacaagaaacaaaagacataaaatatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaa 7243418  T
Q  293 tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataaaaattaactt 390  Q
    ||||| || |||||||||||||||| ||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||    
T  7243419 tccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttaactt 7243518  T
Q  391 caaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  7243519 caaacatacttgaaacttggtcaatatttcttataaaaa 7243557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 1365946 - 1365696
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||| || |||| |||||||||||||||| | || |||||||||||||  |||| |    
T  1365946 atactctctccggtcctttatacaagaaacaaaagacatgaaacatcaggaccaag-aaatacattgaaaatagttatcttcatttaatacatctctaca 1365848  T
Q  282 ttta-agaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctc--ataataaataagggcacaaat 378  Q
    |||| | |||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  1365847 tttacaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaat 1365748  T
Q  379 aaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
     ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  1365747 gaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 1365696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 183 - 429
Target Start/End: Original strand, 24337909 - 24338153
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| | || |||||||||    | |||| ||    
T  24337909 tactccttccggtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaa----cctctacat 24338004  T
Q  283 ttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcacaaataa 380  Q
    |||| |||||||||| || | |||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||||||| |    
T  24338005 ttaaaaaaattccatgaataaccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatga 24338104  T
Q  381 aaattaacttcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    || ||| |||||||||||||||||| |||| ||||||||||||||||||    
T  24338105 aatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 24338153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 183 - 430
Target Start/End: Complemental strand, 32306008 - 32305759
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatat 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||||||| | || || ||||||||||  |||| ||    
T  32306008 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagttatctt-atttaatacatctctacat 32305910  T
Q  283 ttaagaaa-attccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctc--ataataaataagggcacaaata 379  Q
    |||| ||| ||||||| || |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||     
T  32305909 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatg 32305810  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  32305809 aaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 32305759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 192 - 429
Target Start/End: Original strand, 35634693 - 35634932
Alignment:
Q  192 cggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaa 291  Q
    ||||| ||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||| | || |||||||||||||||| || |||||| ||||    
T  35634693 cggtcctttatacaagaaacaaaagacataaaacatcagtaccaaagaaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaa 35634792  T
Q  292 ttccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataaaaattaact 389  Q
     ||||| || | ||||||||||||||||||||||   ||||||||| |||||||||||||  ||||||||||||||||||||||||||| ||| ||| ||    
T  35634793 atccatgaataaccctaaattaattactctttatcgcaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 35634892  T
Q  390 tcaaacatacttgaaatttggacaatatttcttataaaaa 429  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  35634893 tcaaacatacttgaaacttggtcaatatttcttataaaaa 35634932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 191 - 430
Target Start/End: Complemental strand, 8107185 - 8106945
Alignment:
Q  191 ccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaa 290  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  | ||||||||||||||||||| |||||| |||    
T  8107185 ccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaa 8107086  T
Q  291 attccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaataaaaattaac 388  Q
    | | ||| || ||||||||||||||| |||||||||| || |||||||||||||||||| |||  ||||||||||||||||| ||||||| ||| |||      
T  8107085 aattcatgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctatctcataataaataaggacacaaatgaaatttagt 8106986  T
Q  389 ttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||||||||||||||| |||| ||||  |||||||||||||    
T  8106985 ttcaaacatacttgaaacttggtcaat-cttcttataaaaag 8106945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 8670034 - 8669785
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||||| | |||  |||||||||||||||| | || ||||||||||||||||||| |    
T  8670034 atactacctccgatcctttataaaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctaca 8669935  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattc--tctcataataaataagggcacaaata 379  Q
    ||||| |||| |  || || |||| ||||||||||||||||||||| | ||||||| |||||||||||||||  ||||||||| |||||||||||||||     
T  8669934 tttaaaaaaaatttatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaataagggcacaaatg 8669835  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| |||||||||||||||||||||| |||  ||||  |||||||||||||    
T  8669834 aaatttaacttcaaacatacttgaaacttgatcaat-cttcttataaaaag 8669785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 13882385 - 13882137
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| | |||| || ||||||||||||| | || ||||||||||||||||||| |    
T  13882385 atactccctccggtcttttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctaca 13882286  T
Q  282 tttaagaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaata 379  Q
    ||||| | ||||| || || |||| ||||||||||||||||||||| | ||||||| |||| ||||||||  ||||||||||| |||||||||||||||     
T  13882285 tttaaaataattctatgaatacccttaaattaattactctttattccatcaacttacttac-tttaatattctctctcataatcaataagggcacaaatg 13882187  T
Q  380 aaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| ||| ||||||||||| |||||| |||  ||||  |||||||||||||    
T  13882186 aaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaag 13882137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 186 - 430
Target Start/End: Complemental strand, 29226572 - 29226328
Alignment:
Q  186 tccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatattta 285  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| | |||  |||||||||||||||| | || ||||||||||||||||||| |||||    
T  29226572 tccctacggtcctttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacattta 29226473  T
Q  286 agaaaattccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctc--tcataataaataagggcacaaataaaaa 383  Q
    | ||||||| || || |||| ||||||||||||||||||||| | ||||||| |||||||||||||| ||  ||||||| ||||| ||||||||| |||     
T  29226472 aaaaaattctatcaatacccttaaattaattactctttattccatcaacttacttacttttaatattttcattcataatcaataa-ggcacaaatgaaat 29226374  T
Q  384 ttaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||| |||||||||||||||||| |||  ||||  |||||||||||||    
T  29226373 ttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 29226328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 198 - 405
Target Start/End: Complemental strand, 37534052 - 37533842
Alignment:
Q  198 tttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatattt-aagaaaattcca 296  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| | || ||||||||||||| ||||| |||| || ||||||  |    
T  37534052 tttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattaaaaatagtcatcttcatttaatacatttctacatttaaaaaaaattata 37533953  T
Q  297 ttaacacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggcacaaataaaaattaacttcaaa 394  Q
    | || ||   ||||||||||||||||||||| | ||||||| ||| |||||||||  ||||||||||| ||||||||||||||  ||| |||||||||||    
T  37533952 tgaatacatttaaattaattactctttattccatcaacttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaa 37533853  T
Q  395 catacttgaaa 405  Q
     ||| ||||||    
T  37533852 tatatttgaaa 37533842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 42570205 - 42569953
Alignment:
Q  182 atactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||| |||| || |||||| |||||| |||||||||||||||| | |||||| ||||||||||||||||| | || |||||||||||||| | || |    
T  42570205 atactccatccgatcctttatataagaaataaaagacataaaacattaggatcaaagaaatacattgaaaatagttatcttcatttaatacacctttaca 42570106  T
Q  282 tttaagaaaat--tccattaacacccctaaattaattactctttattctaccaacttatttacttttaatattctctc--ataataaataagggcacaaa 377  Q
     |||| ||||   || || || | |||||||||||||||| ||||||  | ||||||| ||| |||||||||||||||  |||||||||||  |||||||    
T  42570105 attaaaaaaaaaatctatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataataaataaatgcacaaa 42570006  T
Q  378 taaaaattaacttcaaacatacttgaaatttggacaatatttcttataaaaag 430  Q
    ||||| ||| ||||||  |||||| ||| |||| |||||||||||||||||||    
T  42570005 taaaatttagcttcaatgatacttaaaacttggtcaatatttcttataaaaag 42569953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 45177496 - 45177605
Alignment:
Q  183 tactccctccggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaat-acattgaaaataataatattcatttaatacacttctata 281  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||||| | |||| |||| |||||||||||| | || ||||||||||||||||||| |    
T  45177496 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaacaccaagaaaataacattgaaaatagtcatcttcatttaatacacttctaca 45177595  T
Q  282 tttaagaaaa 291  Q
    ||||| ||||    
T  45177596 tttaaaaaaa 45177605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 405
Target Start/End: Original strand, 36741610 - 36741815
Alignment:
Q  205 aagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaacacc 304  Q
    ||||||||||||||||||| |||||||||||| |  | |||||||||| | | || |||||||||||| | | || ||||||    |||   |  | | |    
T  36741610 aagaaacaaaagacataaatcatcaagatcaatggcacacattgaaaacagttattttcatttaatactcctataaatttaaatttattttttggatatc 36741709  T
Q  305 cctaaattaattactctttattctaccaacttatttacttttaatattctctc-----ataataaataagggcacaaataaaaattaacttcaaacatac 399  Q
     ||| ||||||||||||| |||| || |||||| |||||||||||||||||||     ||||||||||||| ||||||| ||| ||| |||| |||| |     
T  36741710 actatattaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacat 36741809  T
Q  400 ttgaaa 405  Q
    ||||||    
T  36741810 ttgaaa 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 27420205 - 27420143
Alignment:
Q  192 cggtcatttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaata 254  Q
    ||||||||| || | ||||||||| |||||||| ||||||| ||| |||| ||||||||||||    
T  27420205 cggtcatttttataggaaacaaaatacataaaatatcaagaccaatgaaaaacattgaaaata 27420143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 198 - 429
Target Start/End: Complemental strand, 6990 - 6755
Alignment:
Q  198 tttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaatt--cc 295  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| | || |||||||||||||  |||| ||||||     ||  |     
T  6990 tttattcaagaaacaaaagacataaaacattaagattaaggaaatacattgaaaatagttatcttcatttaatacatctctacatttaatttttttttct 6891  T
Q  296 attaacacccctaaattaattactctttattctaccaacttatttacttttaatattct--ctcataataaataagggcacaaataaaaattaacttcaa 393  Q
    || || | || ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||||| ||| ||| ||||||    
T  6890 atgaatatccttaaattaattactctttattctaccaacttacttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaa 6791  T
Q  394 acatacttgaaatttggacaatatttcttataaaaa 429  Q
    |||||||||||| |||| ||||||||||||||||||    
T  6790 acatacttgaaacttggtcaatatttcttataaaaa 6755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 205 - 428
Target Start/End: Complemental strand, 30688 - 30463
Alignment:
Q  205 aagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccattaacacc 304  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||||| | || || ||||||||||| |||  ||||||     |||||| || |||    
T  30688 aagaaacaaaagacataaatcatcaagaccgaggaaatacattgaaaatagttattttaatttaatacacctctgcatttaaattttttccataaatacc 30589  T
Q  305 cctaaattaattactctttattctaccaacttatttacttttaatatt--ctctcataataaataagggcacaaataaaaattaacttcaaacatacttg 402  Q
    |||||||||||||||||| ||||  |||||||| ||||||||||||||  |||||||||||||||||||||||||| ||| |||| |||||||| |||||    
T  30588 cctaaattaattactcttgattccgccaacttacttacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaacttg 30489  T
Q  403 aaatttggacaatatttcttataaaa 428  Q
    ||| |||| ||| |||||||||||||    
T  30488 aaaattggtcaacatttcttataaaa 30463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 372
Target Start/End: Original strand, 30741 - 30910
Alignment:
Q  205 aagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaataataatattcatttaatacacttctatatttaagaaaattccat-----ta 299  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||| | || |||| |||||| || || | ||||||     ||||||      |    
T  30741 aagaaacaaaagacataaatcatcaagaccaaggaaataaattgaaaatagttattttca-ttaatatacctcaacatttaaattttttccatgaataca 30839  T
Q  300 acacccctaaattaattactctttattctaccaacttatttacttttaatat--tctctcataataaataagggc 372  Q
    | ||||||||||||||||||||| |||| ||||||     ||||||||||||  |||||||||||||||||||||    
T  30840 atacccctaaattaattactcttgattccaccaac----atacttttaatattctctctcataataaataagggc 30910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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