View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1918_high_14 (Length: 426)
Name: NF1918_high_14
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 9159638 - 9160046
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9159638 |
atcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaatttacaatactattg |
9159737 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9159738 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
9159837 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
9159838 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaatagatatctcatacattttcttataagttagattaataacatcatctttaga |
9159937 |
T |
|
| Q |
301 |
ggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatttgca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9159938 |
ggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagtacattttgatctctccacacaaaatccaataagtcttaccacatttgca |
9160037 |
T |
|
| Q |
401 |
tggtgtatt |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
9160038 |
tggtgtatt |
9160046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 32)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 9318350 - 9317946
Alignment:
| Q |
5 |
gccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcat |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||||||| || |||||||||||||| |||||||||||||| ||||| ||| |||||| |
|
|
| T |
9318350 |
gccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatccaattgttcctctagctgcagttaaagtgacaatgctaatgtcat |
9318251 |
T |
|
| Q |
105 |
taggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcat |
204 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9318250 |
ttggataaagctttgccagaccaaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcat |
9318151 |
T |
|
| Q |
205 |
gtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaa |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
9318150 |
gtcacatccttcatgcaaataagcaattccacgagccactccaagagatatctcatacattttcttgcaagttagatcaataacatcatctttagaggaa |
9318051 |
T |
|
| Q |
305 |
atgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatttgcatggt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
9318050 |
atgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatggt |
9317951 |
T |
|
| Q |
405 |
gtatt |
409 |
Q |
| |
|
||||| |
|
|
| T |
9317950 |
gtatt |
9317946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 9319948 - 9320343
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
9319948 |
atcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaatc |
9320047 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
9320048 |
tcattaggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaattt |
9320147 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttaga |
300 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||| ||||| || ||| ||| |||| |
|
|
| T |
9320148 |
gcatgtcacatccttgatgtaaataagccataccacgagccactccaagagatatctcatacattttctgataatttagagagatagtatcctctctaga |
9320247 |
T |
|
| Q |
301 |
ggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttc-acacaaaatccaataagtcttaccacatt |
396 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||| |||||||| |||||||||| |||||||| |
|
|
| T |
9320248 |
ggaaatatatttatcaagagagccattggacatgaattcataaacaagagcacgctttgatc-cttcaacacaaaacccaataagtcgaaccacatt |
9320343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 9350265 - 9350660
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
9350265 |
atcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaatc |
9350364 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
9350365 |
tcattaggataaagcttagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaattt |
9350464 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttaga |
300 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||| |||| ||||| || ||| ||| |||| |
|
|
| T |
9350465 |
gcatgtcacatccttgatgtaaataagccataccacgagccactccaacagatatctcatacattttctgataacttagagagatagtatcctctctaga |
9350564 |
T |
|
| Q |
301 |
ggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttc-acacaaaatccaataagtcttaccacatt |
396 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||| |||||||| |||||||||| |||||||| |
|
|
| T |
9350565 |
ggaaatatatttatcaagagagccattggacatgaattcataaacaagagcacgctttgatc-cttcaacacaaaacccaataagtcaaaccacatt |
9350660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 5 - 410
Target Start/End: Original strand, 8920746 - 8921151
Alignment:
| Q |
5 |
gccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcat |
104 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
8920746 |
gccttataggagactttaccaatatttttgtagaacaactctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgctattgtcaa |
8920845 |
T |
|
| Q |
105 |
taggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcat |
204 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| |||| ||| |||| | |||||||||||||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
8920846 |
ctggataaagttttgcaagaccgaagtctgaaactttggcgatgaagtcatggtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaatttgcat |
8920945 |
T |
|
| Q |
205 |
gtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaa |
304 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||| ||| ||| ||| |||||||| |
|
|
| T |
8920946 |
gtcacagccttgatgcaaataagcaattccacgtgcaactccaagagatatctcgtacatttgcttataagttaaggaaatgtgatcttctctagaggaa |
8921045 |
T |
|
| Q |
305 |
atgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatttgcatggt |
404 |
Q |
| |
|
|| ||| ||||||||||||| || |||||||| |||||||||||||||| |||||||| || ||||||||||||| ||||| |||||||| || || | |
|
|
| T |
8921046 |
atatatctatcaagagagccatttggcatgaaatcataaacaagagcacgttttgatccctcaacacaaaatccaacaagtcgcaccacattggcgtgat |
8921145 |
T |
|
| Q |
405 |
gtattt |
410 |
Q |
| |
|
|||||| |
|
|
| T |
8921146 |
gtattt |
8921151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 5 - 386
Target Start/End: Complemental strand, 9255088 - 9254707
Alignment:
| Q |
5 |
gccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcat |
104 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||| || |||||||| || |||||||| || |||||||| |||||||| ||||||||| | |||| |
|
|
| T |
9255088 |
gccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatccaattgtcccccttgctgcggttaaagtgacaatactaatctcat |
9254989 |
T |
|
| Q |
105 |
taggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcat |
204 |
Q |
| |
|
| |||||||||| ||||||||||||||| ||||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9254988 |
ttggataaagctgtgcaagaccaaagtctgaaactttggggttaaagttctcatcgagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcat |
9254889 |
T |
|
| Q |
205 |
gtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaa |
304 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||| |||| ||||| || ||| ||| |||||||| |
|
|
| T |
9254888 |
ttcgcatccttgatgtaaataagcaataccatgagccactccaagagatatctcgtacattttctgataacttagagagatagtatcctctctagaggaa |
9254789 |
T |
|
| Q |
305 |
atgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtc |
386 |
Q |
| |
|
|| |||||||||||||| || |||| ||||||||||||||||||||||| ||||||| || |||||||| |||||||||| |
|
|
| T |
9254788 |
atatatttatcaagagaaccattggacatgaattcataaacaagagcacgctttgatccctcaacacaaaacccaataagtc |
9254707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 5 - 396
Target Start/End: Original strand, 8932151 - 8932542
Alignment:
| Q |
5 |
gccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcat |
104 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||| || || ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
8932151 |
gccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgctattgtcaa |
8932250 |
T |
|
| Q |
105 |
taggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcat |
204 |
Q |
| |
|
|||||||| ||||||||||||||||| || || |||| ||| |||| || |||||||||||||||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
8932251 |
ctggataaagttttgcaagaccaaagtctgatactttggcgatgaagtcctggtcaagaagtatgttatgaggcttgatatcgaaatgtaaaatttgcat |
8932350 |
T |
|
| Q |
205 |
gtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaa |
304 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||| ||| || ||| |||||||| |
|
|
| T |
8932351 |
gtcacaaccttgatgcaaataagcaattccacgtgcaactccaagagatatctcgtacatttgcttataagttaaggaaatatggtcttctctagaggaa |
8932450 |
T |
|
| Q |
305 |
atgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatt |
396 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||| ||||| |||||||| |
|
|
| T |
8932451 |
atatatctatcaagagagccattgggcatgaaatcataaacaagagcacgttttgatttctcaacacaaaatccaacaagtcgcaccacatt |
8932542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 5 - 396
Target Start/End: Original strand, 8956073 - 8956464
Alignment:
| Q |
5 |
gccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcat |
104 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||| || || |||||||| |||||||||||||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
8956073 |
gccttataggaaactttaccaatatttttgtagaataattccggagccatgtaaccaattgttcctcttgcagccgtcaaagttacaatgctattgtcaa |
8956172 |
T |
|
| Q |
105 |
taggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcat |
204 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
8956173 |
caggataaagttttgcaagaccaaagtctgaaaccttggcgatgaagtctttgtcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcat |
8956272 |
T |
|
| Q |
205 |
gtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaa |
304 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| ||| ||| || |||||||| |
|
|
| T |
8956273 |
gtcacaaccttgatgcaaataagcaattccacgtgcaactccaagagatatctcatacatttgcttataagttaaggaaatatgatcttccctagaggaa |
8956372 |
T |
|
| Q |
305 |
atgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatt |
396 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||| |||||||||||||||| |||||||| || | |||||||||| ||||| |||||||| |
|
|
| T |
8956373 |
atatatctatcaagagagccattgggcatgaaatcataaacaagagcacgttttgatccctcaatgcaaaatccaacaagtcgcaccacatt |
8956464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 22 - 396
Target Start/End: Original strand, 8942084 - 8942458
Alignment:
| Q |
22 |
accaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagctttgca |
121 |
Q |
| |
|
||||||||||||||||||||| || || ||||| ||||||||||| ||||| || || || | ||||||||| ||||| ||| |||||||||| |||||| |
|
|
| T |
8942084 |
accaatatttttgtagaacaattctggtgccatgtaaccaattgtacctctagcagcggtcatagttacaatgctattttcaataggataaagttttgca |
8942183 |
T |
|
| Q |
122 |
agaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgca |
221 |
Q |
| |
|
|||||||| || |||||||| | || |||| || |||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
8942184 |
agaccaaaatctgaaacctttgcaatgaagtcctggtcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgca |
8942283 |
T |
|
| Q |
222 |
aataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaaatgtatttatcaagaga |
321 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||| | |||||||| ||| ||| ||| |||| || || |||||||||||||| |
|
|
| T |
8942284 |
aataagcaattccacgtgcaacggcaagagatatctcatatatttgtttataagttaaggaaatatgatcttctctagatgatatatatttatcaagaga |
8942383 |
T |
|
| Q |
322 |
gccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatt |
396 |
Q |
| |
|
||| ||||||||||| |||||||||||||| | |||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
8942384 |
gccattgggcatgaaatcataaacaagagctctttttgatccctcaacacaaaatccaataagtcgcaccacatt |
8942458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 23 - 409
Target Start/End: Complemental strand, 9453866 - 9453480
Alignment:
| Q |
23 |
ccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagctttgcaa |
122 |
Q |
| |
|
|||||||||| ||||||||| || |||||||| ||||||||||||||||||||||| || |||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9453866 |
ccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttgcaa |
9453767 |
T |
|
| Q |
123 |
gaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaa |
222 |
Q |
| |
|
||||||| || ||||| || ||||| || || ||||||||||| ||||| || ||||| |||||||||||||| |||||||| ||||| |||||||| | |
|
|
| T |
9453766 |
gaccaaaatctgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacacccttgatgaag |
9453667 |
T |
|
| Q |
223 |
ataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaaatgtatttatcaagagag |
322 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| | | ||| ||| || || | ||||| | |||| ||||||||||| ||| |
|
|
| T |
9453666 |
atatgaaattccacgagccactccaagagatatctcatatatttggtcgttagtaagagatataactccctctttgttgaaaatatatttatcaagtgag |
9453567 |
T |
|
| Q |
323 |
ccgttgggcatgaattcataaacaagagcacattttgatctcttc-acacaaaatccaataagtcttaccacatttgcatggtgtatt |
409 |
Q |
| |
|
|| ||||||||| | || ||||||||||| | |||||||| |||| |||||||| ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
9453566 |
cctttgggcatgtactcgtaaacaagagcgcgttttgatc-cttcgacacaaaacccaatgagtcttaccacatttgaatggtatatt |
9453480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 9486252 - 9485856
Alignment:
| Q |
2 |
tcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgt |
101 |
Q |
| |
|
||||||||||| |||| ||| || ||||||| ||||||||| || |||||||| ||||| ||||||||||||||||| || || || |||| || |||| |
|
|
| T |
9486252 |
tcagccttgtatgatattcctccgatattttggtagaacaattcaggagccatgtaaccgattgttcctcttgctgctgtcaaggtggcaatgcttttgt |
9486153 |
T |
|
| Q |
102 |
cattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttg |
201 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||| || |||| ||| || ||||||||||| ||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
9486152 |
caataggataaagctttgcaagaccaaagtccgaaactttagggacaaaattttcgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaatttg |
9486053 |
T |
|
| Q |
202 |
catgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagag |
301 |
Q |
| |
|
||| |||| |||||||| | ||| | ||||||||||||||||||||||||||||||||| | | ||||||| || || | ||||| | |
|
|
| T |
9486052 |
cataccacagccttgatgaagatatgaaattccacgagccactccaagagatatctcatatatttggtcgttagttagagatataactccctctttgttg |
9485953 |
T |
|
| Q |
302 |
gaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttc-acacaaaatccaataagtcttaccacatttg |
398 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| | || ||||||||||||| ||| |||| |||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
9485952 |
aaaatatatttatcaagtgagccattgggcatgtactcgtaaacaagagcacgtttcgatc-cttcgacacaaaacccaatgagtcttaccacatttg |
9485856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 9432879 - 9432641
Alignment:
| Q |
23 |
ccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagctttgcaa |
122 |
Q |
| |
|
|||||||||| ||||||||| || |||||||| ||||||||||||||||||||||| || ||||| |||| || |||||| |||||||||||||||||| |
|
|
| T |
9432879 |
ccaatattttggtagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgcttttgtcaataggataaagctttgcaa |
9432780 |
T |
|
| Q |
123 |
gaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaa |
222 |
Q |
| |
|
|||||||||| ||||| || ||||| || || ||||| ||||| ||||| || ||||| |||||||||||||| |||||||| ||||| || ||||| | |
|
|
| T |
9432779 |
gaccaaagtccgaaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacaaccctgatgaag |
9432680 |
T |
|
| Q |
223 |
ataagcaattccacgagccactccaagagatatctcata |
261 |
Q |
| |
|
||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
9432679 |
atatgaaattccaagagccactccaagagatatctcata |
9432641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 9399678 - 9400086
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||| || |||| ||| |||||||||| | |||||| || |||||||| ||||||||||||||||||||||| | ||||| |||| || ||| |
|
|
| T |
9399678 |
atcagccttatatgatattcccccaatattttggaagaacagttcaggagccatgtaaccaattgttcctcttgctgccatcaaagtggcaatgcttttg |
9399777 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||| || ||||| || || ||||||||||| ||||| || ||||| |||||||||||||| |||| |
|
|
| T |
9399778 |
tcaataggataaagctttgcaagaccaaagtccgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaattt |
9399877 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttaga |
300 |
Q |
| |
|
|||| ||||| || ||||| | ||| | |||||| ||||||||||||||||||||||||| | | ||||||| || || | ||||| |
|
|
| T |
9399878 |
gcatatcacaaccctgatgaagatatgaaattccttgagccactccaagagatatctcatatatttggtcgttagttagagatataactccctctttgtt |
9399977 |
T |
|
| Q |
301 |
ggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttc-acacaaaatccaataagtcttaccacatttgc |
399 |
Q |
| |
|
| |||| ||||||||||| ||||| ||||||||| | || ||||||||||| | ||| |||| |||| |||||||| || || |||||||||||||||| |
|
|
| T |
9399978 |
gaaaatatatttatcaagtgagccattgggcatgtactcgtaaacaagagctcgtttcgatc-cttcgacacaaaaccctatgagtcttaccacatttga |
9400076 |
T |
|
| Q |
400 |
atggtgtatt |
409 |
Q |
| |
|
||||| |||| |
|
|
| T |
9400077 |
atggtatatt |
9400086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 9142931 - 9142688
Alignment:
| Q |
5 |
gccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcat |
104 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| | || ||||| ||||| ||| |
|
|
| T |
9142931 |
gccttataggacactcccccaatatttttgtagaacaactccggagccatatatccaatagtacctcttgctgcagtcattgtgacaatgctattctcaa |
9142832 |
T |
|
| Q |
105 |
taggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcat |
204 |
Q |
| |
|
| ||||| |||||||| || ||||||||||| | ||| || ||||||||||| ||||| || || ||||||||||||||||||||||| || || | ||| |
|
|
| T |
9142831 |
tcggatatagctttgcgagtccaaagtcagatatctttggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgtaatatcttcat |
9142732 |
T |
|
| Q |
205 |
gtcacatccttgatgcaaataagcaattccacgagccactccaa |
248 |
Q |
| |
|
|||||||| || || | |||||||||||| ||||| ||||||| |
|
|
| T |
9142731 |
ttcacatccatggtggagataagcaattcctcgagctactccaa |
9142688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 9384271 - 9384531
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| || |||||||| ||||| | ||||||||||| |||||||| || ||||| |||| | |
|
|
| T |
9384271 |
atcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccatgtaacccaaagttcctcttgccgcagttaaggtaacaatgctatcg |
9384370 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
| |||||| ||||||||||| ||||| || |||||||| || | ||| | ||||| ||||| || ||||| ||||||||||||||||| | |||| |
|
|
| T |
9384371 |
ttcacaggatatagctttgcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaattt |
9384470 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcata |
261 |
Q |
| |
|
|||| |||||||||||||||| ||| | || |||||||| | ||| |||||||| ||||| |
|
|
| T |
9384471 |
gcatatcacatccttgatgcagatattctatcccacgagctattccgagagatatttcata |
9384531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 9056607 - 9056854
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactatt- |
99 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| | |||||||| | || ||||| ||||| |
|
|
| T |
9056607 |
atcagccttatacgacactccaccaatatttttgtaaaacaattcaggagccatatatccaattgtgcctttggctgcagtcattgtgacaatgctattc |
9056706 |
T |
|
| Q |
100 |
gtcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatt |
199 |
Q |
| |
|
|| ||| ||||| |||||||| || ||||||||||| | ||| || ||||| ||||||||||| || || || || |||||||||||||||||||| ||| |
|
|
| T |
9056707 |
gtaatt-ggatatagctttgcgagtccaaagtcagatatctttggaataaaattctcgtcaagtaggatattgtgtggcttgatatcaaaatgcaaaatt |
9056805 |
T |
|
| Q |
200 |
tgcatgtcacatccttgatgcaaataagcaattccacgagccactccaa |
248 |
Q |
| |
|
| ||| |||||||| | ||| | |||| |||| |||||||| ||||||| |
|
|
| T |
9056806 |
ttcatttcacatccattatggagataatcaatcccacgagctactccaa |
9056854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 8874132 - 8873885
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||| ||||| || |||||||| ||||| | || ||||| ||||| |
|
|
| T |
8874132 |
atcagccttataggacactccaccaatatttttataaaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtgacaatgctattc |
8874033 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|| |||||| ||||| || | ||||||||||| || || || |||||||||| |||||||| ||||| || ||||| |||||||||||||| || | |
|
|
| T |
8874032 |
tccacaggatatagcttagccaatccaaagtcagagactttcggagtaaagttctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatct |
8873933 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaa |
248 |
Q |
| |
|
||| |||||||| ||||| | ||||||||| |||||||| ||||||| |
|
|
| T |
8873932 |
tcatttcacatccatgatggagataagcaatcccacgagctactccaa |
8873885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9105055 - 9104808
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| | || | | || || |
|
|
| T |
9105055 |
atcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgctgttc |
9104956 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|| | |||| |||||||| | ||||||||||| | || |||||||||||||| |||||||| || || |||||||||||||||||||| || || | |
|
|
| T |
9104955 |
tctattggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaatct |
9104856 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaa |
248 |
Q |
| |
|
||| |||||||| || || | ||||||||| |||||||| ||||||| |
|
|
| T |
9104855 |
tcatttcacatccgtggtgaagataagcaatcccacgagctactccaa |
9104808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9234123 - 9233903
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| || |||||||| ||||| | ||||||||||| |||||||| | ||||| |||| | |
|
|
| T |
9234123 |
atcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacccaaagttcctcttgccgcagttaacggaacaatgctatcg |
9234024 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
| ||| |||||||||||||| ||||| || |||||||| || | || | ||||| ||||| || ||||| ||||||||||||||||| | |||| |
|
|
| T |
9234023 |
ttcacagggtaaagctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaattt |
9233924 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgca |
221 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
9233923 |
gcatatcacaaccttgatgca |
9233903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9096873 - 9096626
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| | || | | || || |
|
|
| T |
9096873 |
atcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagcagtcattgtgatgacgctgttc |
9096774 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|| | |||| |||||||| | ||||||||||| | || |||||||||||||| |||||||| || || |||||||||||||||||||| || || | |
|
|
| T |
9096773 |
tctattggatgtagctttgccaatccaaagtcagatagtttagggataaagttctcatcaagaaggatattgtggggcttgatatcaaaatgtaaaatct |
9096674 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaa |
248 |
Q |
| |
|
||| |||||||| || || | ||||||||| |||||||| ||||||| |
|
|
| T |
9096673 |
tcatttcacatccgtggtgaagataagcaatcccacgagctactccaa |
9096626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8964558 - 8964797
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||| || |||||||| || || | || ||||| ||||| |
|
|
| T |
8964558 |
atcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgctgtcattgtgacaatgctattc |
8964657 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|| |||||| ||||| || | ||||||||||| || || ||| | || ||||| |||||||| ||||| || ||||| |||||||||||||| || | |
|
|
| T |
8964658 |
tctacaggatatagcttagccaatccaaagtcagagacttttggggtgaaattctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatct |
8964757 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagc |
240 |
Q |
| |
|
||| || ||||| || || | ||||||||| |||||||| |
|
|
| T |
8964758 |
tcatttcgcatccatggtgaagataagcaatcccacgagc |
8964797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9082603 - 9082356
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| | || | | ||||| |
|
|
| T |
9082603 |
atcagccttgtacgacactccccctatatttttgtagaataactcaggagccatatatccaattgtacctcttgctgcagtcattgtgatgacgctattc |
9082504 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|| | || | || ||||| | ||||||||||| | || |||||||||||||| ||||| | || || |||||||||||||||||||| || || | |
|
|
| T |
9082503 |
tctatcgggtgtagttttgccaatccaaagtcagatattttagggataaagttctcatcaagcaagatattgtggggcttgatatcaaaatgtaaaatct |
9082404 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaa |
248 |
Q |
| |
|
||| |||||||| || || | ||||||||| |||||||| ||||||| |
|
|
| T |
9082403 |
tcatttcacatccatggtgaagataagcaatcccacgagctactccaa |
9082356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 8999709 - 9000088
Alignment:
| Q |
1 |
atcagccttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattg |
100 |
Q |
| |
|
||||||||| || || ||||| ||||||||||| |||||||| || ||||||||||| ||||| || |||||||| ||||| | || ||||| ||||| |
|
|
| T |
8999709 |
atcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtgacaatgctattc |
8999808 |
T |
|
| Q |
101 |
tcattaggataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagattt |
200 |
Q |
| |
|
|| ||||| ||||| || | || |||||||| || || || | ||||| || |||||||| ||||| || ||||||||||||||||| || || | |
|
|
| T |
8999809 |
tccacgggatatagcttagccaatccgaagtcagagacttttggtgtgaagttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaatct |
8999908 |
T |
|
| Q |
201 |
gcatgtcacatccttgatgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcat-ctttag |
299 |
Q |
| |
|
||| || ||||| || || | ||||||||| |||||||| ||||||| ||||| ||| | | ||| ||| ||| | ||| || | |||||| |
|
|
| T |
8999909 |
tcatttcgcatccatggtggagataagcaatcccacgagctactccaactgatatgtcaaaaatttggctatagcttatattta-cacttccttctttag |
9000007 |
T |
|
| Q |
300 |
aggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaa |
380 |
Q |
| |
|
|| |||| |||||||||| || || || ||||||||||||||||||||||||| ||| |||| || | ||||||||||| |
|
|
| T |
9000008 |
agaaaataaatttatcaagtgatccattaggcatgaattcataaacaagagcacgtttcgatccctcgatacaaaatccaa |
9000088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 11033276 - 11033478
Alignment:
| Q |
50 |
gccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagctttgcaagaccaaagtcagaaaccttggggataa |
149 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || ||||| || || || ||||| |||| | || || ||||| |||||||| || ||| | | |
|
|
| T |
11033276 |
gccatatatccaatggttcctcttgctgcagttaatgtgacaatgcttttatctgtaggacaaagtctagctagtccaaaatcagaaacttttgggttga |
11033375 |
T |
|
| Q |
150 |
agttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaag |
249 |
Q |
| |
|
| ||||| |||||||| |||||||| ||||| || ||||| || | |||| ||| || ||||| | |||||| || |||| || |||||||||||||| |
|
|
| T |
11033376 |
aattctcatcaagaaggatgttatgaggctttatgtcaaagtgtagaattttcatatcgcatccattatgcaagtactcaatgcctcgagccactccaag |
11033475 |
T |
|
| Q |
250 |
aga |
252 |
Q |
| |
|
||| |
|
|
| T |
11033476 |
aga |
11033478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 9096565 - 9096494
Alignment:
| Q |
309 |
atttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaa |
380 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||||| |||||||| || | ||||||||||| |
|
|
| T |
9096565 |
atttatcaagagatccattaggcatgaattcataaacaagagcacgttttgatccctcaatacaaaatccaa |
9096494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 9104747 - 9104676
Alignment:
| Q |
309 |
atttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaa |
380 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||||| |||||||| || | ||||||||||| |
|
|
| T |
9104747 |
atttatcaagagatccattaggcatgaattcataaacaagagcacgttttgatccctcaatacaaaatccaa |
9104676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 409
Target Start/End: Complemental strand, 9432599 - 9432493
Alignment:
| Q |
303 |
aaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttc-acacaaaatccaataagtcttaccacatttgcat |
401 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| | || ||||||||||| | |||||||| |||| |||||||| |||| |||||||||||||||| || |
|
|
| T |
9432599 |
aaatatatttatcaagtgagccattgggcatgtactcgtaaacaagagcgcgttttgatc-cttcgacacaaaacccaacgagtcttaccacatttgaat |
9432501 |
T |
|
| Q |
402 |
ggtgtatt |
409 |
Q |
| |
|
||| |||| |
|
|
| T |
9432500 |
ggtatatt |
9432493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 11010985 - 11011187
Alignment:
| Q |
50 |
gccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagctttgcaagaccaaagtcagaaaccttggggataa |
149 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| | ||||| || || || ||||| |||| | || || ||||| |||||||| || || | | |
|
|
| T |
11010985 |
gccatatatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggacaaagtctagctagtccaaaatcagaaacttttggattga |
11011084 |
T |
|
| Q |
150 |
agttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgcaaataagcaattccacgagccactccaag |
249 |
Q |
| |
|
| || || |||||||| |||||||| ||||| |||||||| || | |||| ||| | ||||| |||||||| || |||| ||||||||||||||||| |
|
|
| T |
11011085 |
aattttcatcaagaagaatgttatgaggctttatatcaaagtgtagaattttcatattgcatccatgatgcaagtactcaatgccacgagccactccaag |
11011184 |
T |
|
| Q |
250 |
aga |
252 |
Q |
| |
|
||| |
|
|
| T |
11011185 |
aga |
11011187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 9082311 - 9082242
Alignment:
| Q |
293 |
tctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatc |
362 |
Q |
| |
|
||||||||| |||| ||||||||||||| || || ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
9082311 |
tctttagagaaaataaatttatcaagagatccattaggcatgaattcataaacaagagcacgtttggatc |
9082242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 9488603 - 9488790
Alignment:
| Q |
8 |
ttgtaggatactccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattag |
107 |
Q |
| |
|
||||| |||||||| |||||||| || |||||||| || || ||||| || || || ||||||||||| || || | || ||||| |||||||| | | |
|
|
| T |
9488603 |
ttgtacgatactcctccaatattcttatagaacaattctggtgccatgtatcccatagttcctcttgcagctgtaagagacacaatgctattgtccgttg |
9488702 |
T |
|
| Q |
108 |
gataaagctttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaa |
195 |
Q |
| |
|
|||| | |||||| || | ||| || |||||||| || | ||||| |||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
9488703 |
gatataactttgctagtctaaaatctgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaaatgcaa |
9488790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 8964850 - 8964938
Alignment:
| Q |
293 |
tctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaat |
381 |
Q |
| |
|
||||||||| |||| |||||||||| || || || | ||||||||||||||||||||||| ||||||| || |||||||| ||||| |
|
|
| T |
8964850 |
tctttagagaaaataaatttatcaagggatccattagacatgaattcataaacaagagcacggtttgatccctcgacacaaaaaccaat |
8964938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 11004755 - 11004679
Alignment:
| Q |
329 |
ggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtcttaccacatttgcatggtg |
405 |
Q |
| |
|
|||||||||||||| | |||||||| |||||| | || ||||||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
11004755 |
ggcatgaattcatatataagagcacgttttgaaccctccacacaaaatccaatgagttgtaccacattgacatggtg |
11004679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 9056899 - 9056966
Alignment:
| Q |
293 |
tctttagaggaaatgtatttatcaagagagccgttgggcatgaattcataaacaagagcacattttga |
360 |
Q |
| |
|
||||||||| |||| |||||||||||||| || || |||| ||||||||||||||||| | |||||| |
|
|
| T |
9056899 |
tctttagagaaaatatatttatcaagagatccattacgcataaattcataaacaagagctcgttttga |
9056966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 15927244 - 15926875
Alignment:
| Q |
17 |
actccaccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagct |
116 |
Q |
| |
|
||||| ||||||||||||||||| || || |||||||| || ||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
15927244 |
actcctccaatatttttgtagaataattcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatactaatctcattaggataaagct |
15927145 |
T |
|
| Q |
117 |
ttgcaagaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttg |
216 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
15927144 |
ttgcaagaccaaagtcggaaactttggggataaagttctcatcaagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatgttacatccttg |
15927045 |
T |
|
| Q |
217 |
atgcaaataagcaattccacgagccactccaagagatatctcatacannnnnnnataagttagattaatcacatcatctttagaggaaatgtatttatca |
316 |
Q |
| |
|
||| || ||||| || |||||||| |||||||||||||||||||||| |||||||||| || |||| || |||| ||||| ||||||||| |
|
|
| T |
15927044 |
atgtaagtaagccataccacgagcaactccaagagatatctcatacatttgcttataagttagagagatagcatcctcgctagaagaaatatatttatca |
15926945 |
T |
|
| Q |
317 |
agagagccgttgggcatgaattcataaacaagagcacattttgatctcttcacacaaaatccaataagtc |
386 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
15926944 |
agagaaccattgggcatgaattcataaacaagagcacgctttgatccctcaacacaaaatccaataagtc |
15926875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 27692488 - 27692684
Alignment:
| Q |
23 |
ccaatatttttgtagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaagttacaatactattgtcattaggataaagctttgcaa |
122 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| || || |||||||||||||| || |||||||||| |||||| | || | | || | ||| || | |
|
|
| T |
27692488 |
ccaatgttcttgtataacaactcaggagccatgtaccccattgttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgcca |
27692587 |
T |
|
| Q |
123 |
gaccaaagtcagaaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatg |
219 |
Q |
| |
|
|||||||||||| | ||| ||| ||| |||||||||||||| |||||||| || || |||||||| || | ||||||||||||||| |||||||| |
|
|
| T |
27692588 |
aaccaaagtcagatatctttgggtcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg |
27692684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University