View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_18 (Length: 399)
Name: NF1918_high_18
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 40 - 381
Target Start/End: Original strand, 37201211 - 37201552
Alignment:
| Q |
40 |
tacagctaaactagttgtaaaatcgagagttaattaattttatcgggttttacttgatctcataagagtttataacaagagagtttacaagcaggttaac |
139 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201211 |
tacaactaaactagttgtaaaatcgagagttaattaattttatcgggttttacttgatctcataagagtttataacaagagagtttacaagcaggttaat |
37201310 |
T |
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| Q |
140 |
ttgttttcacgacctagaattgcaaactcgtcagagtttaaaagttaactgaacagcttaacaaccttggtctgaaagatagaaatctcaactaactgac |
239 |
Q |
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| T |
37201311 |
ttgttttcacgacctagaattgcaaactcgtcagagtttaaaagttaactgaacagcttaacaaccttggtctgaaagatagaaatctcaactaactgac |
37201410 |
T |
|
| Q |
240 |
tatgtagcttcttatatgcttaattaatgtgtggcttttactttatcttaactgtgctaaagggtttctgtatatagaaccagctcttgtagacatgcaa |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201411 |
tatgtagcttcttatatgcttaattaatgtgtggcttttactttatcttaactgtgctaaagggtttctgtatatagaaccagctcttgtagacatgcaa |
37201510 |
T |
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| Q |
340 |
aagttatgttacttttcctgtgaacagttcctaaagcataat |
381 |
Q |
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| T |
37201511 |
aagttatgttacttttcctgtgaacagttcctaaagcataat |
37201552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 37216444 - 37216509
Alignment:
| Q |
241 |
atgtagcttcttatatgcttaattaatgtgtggcttttactttatcttaactgtgctaaagggtttctgt |
310 |
Q |
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| T |
37216444 |
atgtagcttcttatatgcttaatt----tgtggctcttattttatcttaactgtgctaaagggtttctgt |
37216509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 37200314 - 37200342
Alignment:
| Q |
13 |
cagattaacagataacttgaacacaggta |
41 |
Q |
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| T |
37200314 |
cagattaacagataacttgaacacaggta |
37200342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 7526779 - 7526816
Alignment:
| Q |
263 |
ttaatgtgtggcttttactttatcttaactgtgctaaa |
300 |
Q |
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| T |
7526779 |
ttaatgtgtggctttcattttatcttaactgtgctaaa |
7526816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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