View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_19 (Length: 395)
Name: NF1918_high_19
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 36912851 - 36913218
Alignment:
| Q |
12 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
111 |
Q |
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| T |
36912851 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
36912950 |
T |
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| Q |
112 |
tgttgtgtttttgtttatcgtgaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
211 |
Q |
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| T |
36912951 |
tgttgtgtttttgtttatcgtgaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
36913050 |
T |
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| Q |
212 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggagtggccactacatgcccattattcaagtcag |
311 |
Q |
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| T |
36913051 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggagtggccactacatatccattattcaagtcag |
36913150 |
T |
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| Q |
312 |
gaattnnnnnnnntgtgtaaaagaaaattactctaaattaagacaaaccatcatataacatgtccattt |
380 |
Q |
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| T |
36913151 |
gaatt-aaaaaaatgtgtaaaagaaaattactctaaataaagacaaaccatcatataacatgtccattt |
36913218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 11166148 - 11166515
Alignment:
| Q |
12 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
111 |
Q |
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| T |
11166148 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
11166247 |
T |
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| Q |
112 |
tgttgtgtttttgtttatcgtgaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
211 |
Q |
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| T |
11166248 |
tgttgtgtttttgtttatcgagaactttaattttatgttggtttctgttgttggtaagacatgttttatttatatcaatgctagcagcttttcttttcct |
11166347 |
T |
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| Q |
212 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggagtggccactacatgcccattattcaagtcag |
311 |
Q |
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| T |
11166348 |
gttatatgcaaagccagctttcctttatttatatcaatctcgcattttccttatttgagttgcaatggaatggccactacataaccattattcaagtcag |
11166447 |
T |
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| Q |
312 |
gaattnnnnnnnntgtgtaaaagaaaattactctaaattaagacaaaccatcatataacatgtccattt |
380 |
Q |
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| T |
11166448 |
gaatt-aaaaaaatgtgtaaaagaaaattactctaaataaagacaaaccatcatataacatgtccattt |
11166515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 5474820 - 5474768
Alignment:
| Q |
142 |
ttttatgttggtttctgttgttggtaagacatgttttatttatatcaatgcta |
194 |
Q |
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| T |
5474820 |
ttttattttggtttgtgttgttggtaagacatgttttatgaataacaatgcta |
5474768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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