View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1918_high_23 (Length: 378)
Name: NF1918_high_23
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_23 |
 | |
|
| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 33 - 362
Target Start/End: Original strand, 2811890 - 2812219
Alignment:
| Q |
33 |
cggtgacaacatggtgacctaacggtaacagctagcaacaagcaacataattagattcaattgatcttaattcacataggtttgatttcaattcataata |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2811890 |
cggtgacaacatggtgacctaacggtaacagctagcaacaagcaacataattagattcaattgatcttaatttacataggtttgatttcaattcataata |
2811989 |
T |
|
| Q |
133 |
atctcatttaatttgaaactaannnnnnnatgttttgcgttagaaactattgacaacttctttaaagaatcaatacaaatgctgcaagcagttcctctcc |
232 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2811990 |
atctcatttaatttgaaactaatttttttatgttttgcgttagaaactattgacaacttctttaaagaatcgatacaaatgctgcaagcagttcctctcc |
2812089 |
T |
|
| Q |
233 |
aattgaagcatccgatctcaatatatcacctcaagaaaaagaacaatttgagccaaaacgacaaagacttcgtcatgaagaaattagtcggtctcaaatt |
332 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
2812090 |
aattgaagcattcgatctcaatatatcacctcaaaaaaaagaacaatctgagccaaaacgacaaagacttcatcatgaagaaattagtcgttctcaaatt |
2812189 |
T |
|
| Q |
333 |
taagcatatccaggattgcgactgttgatt |
362 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |
|
|
| T |
2812190 |
taagcagatccaggattgcgattgttgatt |
2812219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 10585547 - 10585724
Alignment:
| Q |
176 |
aaactattgacaacttctttaaa--gaatcaatacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaag |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||||||||| |||||| ||| |||||||||||| ||| |
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|
| T |
10585547 |
aaactattgacaacttctttaaaaagaatcgatccaaatgctccaagtagttcctctccaattgaagcatccaatctcattatttcacctcaagaacaag |
10585646 |
T |
|
| Q |
274 |
aacaatttgagccaaaacgacaaagacttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgc |
351 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||||||| ||||| ||||||||| ||| | |||||| ||||| |
|
|
| T |
10585647 |
aacaatctgagccaaaacgccaaagactttgtcatgaagaaatgagtcgttctcaaattgaagtagatccagaattgc |
10585724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 353
Target Start/End: Complemental strand, 5381418 - 5381264
Alignment:
| Q |
205 |
atacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaag------aacaatttgagccaaaacgacaaag |
298 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| | ||| || | |||||||||||| ||| |||||| |||| |||||| ||||| |
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|
| T |
5381418 |
atacaaatgctgcaagtagttcctctccaattgaagcatccaacctcgatgtttcacctcaagaacaagaacaaaaacaatctgagtcaaaacaccaaag |
5381319 |
T |
|
| Q |
299 |
acttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgcga |
353 |
Q |
| |
|
|||| |||||||||| | ||| | ||||||||| ||| | |||||||||||||| |
|
|
| T |
5381318 |
actttatcatgaagaattgagttgttctcaaattgaagtagatccaggattgcga |
5381264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 5382388 - 5382320
Alignment:
| Q |
41 |
acatggtgacctaa-cggtaacagctagcaacaagcaacataattagattcaattgatcttaattcaca |
108 |
Q |
| |
|
|||||||||||||| | | |||| ||| || ||| |||||||||||||||| |||||||| |||||||| |
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|
| T |
5382388 |
acatggtgacctaaacagcaacaactaacatcaaacaacataattagattcgattgatctcaattcaca |
5382320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 354
Target Start/End: Original strand, 48777159 - 48777333
Alignment:
| Q |
178 |
actattgacaacttctttaaa-gaatcaatacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaagaac |
276 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||| |||||| |
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|
| T |
48777159 |
actattgacaacttctttaaaagaattgttacaaatgctgcaagtagttcctctccaattgaagcatccaatctcaatatttcacctaaagaacaagaac |
48777258 |
T |
|
| Q |
277 |
aatttgagccaaaacgacaaagacttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgcgac |
354 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| ||| | ||||||||| ||| | ||||| ||||||||| |
|
|
| T |
48777259 |
aat---agccaaaacgccaaagacttcgtcatgaagaaatgagttgttctcaaattgaagtagatccaagattgcgac |
48777333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 46722324 - 46722501
Alignment:
| Q |
176 |
aaactattgacaacttctttaaa--gaatcaatacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaag |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||| ||||||||| |||||||||||||| |||||| ||| |||||||||||| ||| |
|
|
| T |
46722324 |
aaactattgacaacttctttaaaaagaatcgatccaaatgctccaagtagttcctcttcaattgaagcatccaatctcattatttcacctcaagaacaag |
46722423 |
T |
|
| Q |
274 |
aacaatttgagccaaaacgacaaagacttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgc |
351 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||||||||| ||||| ||||||||| ||| | |||||| ||||| |
|
|
| T |
46722424 |
aacaatctgagccaaaacaccaaagactttgtcatgaagaaatgagtcgttctcaaattgaagtagatccagaattgc |
46722501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 13769284 - 13769472
Alignment:
| Q |
176 |
aaactattgacaacttctttaaa-gaatcaatacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaaga |
274 |
Q |
| |
|
|||||||||||| ||||||||| || | ||||||||||||||||| ||||||||| |||||||||||||| | |||||| | |||||||||||| |||| |
|
|
| T |
13769284 |
aaactattgacacattctttaaaagagtgaatacaaatgctgcaagtagttcctcttcaattgaagcatccaacctcaatgtttcacctcaagaacaaga |
13769383 |
T |
|
| Q |
275 |
acaa------------tttgagccaaaacgacaaagacttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgc |
351 |
Q |
| |
|
|||| | |||||||||||| ||||||||||||||||||||||| ||| | | ||||||| ||| | |||||||||||| |
|
|
| T |
13769384 |
acaagaacaagaaaattctgagccaaaacgccaaagacttcgtcatgaagaaatgagttgttttcaaattgaagtagatccaggattgc |
13769472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 13768904 - 13768983
Alignment:
| Q |
71 |
caagcaacataattagattcaattgatcttaattcacataggtttgatttcaattcataataatctcatttaatttgaaa |
150 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
13768904 |
caagcaacataattagattcgattgatctcaattcacacaggtttgatgtcaattcacagtaatctcatttaatttgaaa |
13768983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 30343110 - 30343287
Alignment:
| Q |
176 |
aaactattgacaacttctttaaa--gaatcaatacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaag |
273 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||| ||||||||| |||||||||||||| |||||| ||| |||||||||||| ||| |
|
|
| T |
30343110 |
aaactattgacaacttctttaaaaagaatcgatccaaatgctccaagtagttcctcttcaattgaagcatccaatctcattatttcacctcaagaacaag |
30343209 |
T |
|
| Q |
274 |
aacaatttgagccaaaacgacaaagacttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgc |
351 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||||||||| ||||| ||||||||| ||| | |||||| ||||| |
|
|
| T |
30343210 |
aacaatctgagccaaaactccaaagactttgtcatgaagaaatgagtcgttctcaaattgaagtagatccagaattgc |
30343287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 176 - 363
Target Start/End: Complemental strand, 39684998 - 39684806
Alignment:
| Q |
176 |
aaactattgacaacttctttaaa-gaatcaatacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaaga |
274 |
Q |
| |
|
|||||||||||| ||||||||| || | |||||||||||||||| ||||||||||||||| |||||||| | |||||| | |||||||||||| |||| |
|
|
| T |
39684998 |
aaactattgacacattctttaaaagagtggatacaaatgctgcaagtagttcctctccaattaaagcatccaacctcaatgtttcacctcaagaacaaga |
39684899 |
T |
|
| Q |
275 |
acaatttgagccaaaacgacaaagacttcgtcatgaagaaa----ttagtcggtctcaaatttaagcatatccaggattgcgactgttgattt |
363 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| | ||| | ||||||||| ||| | ||||||||||||||| | |||||| |
|
|
| T |
39684898 |
acaatctgagccaaaacaccaaagacttcgtcatgaagaaagaaatgagttgttctcaaattgaagtagatccaggattgcgaccgatgattt |
39684806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 39685349 - 39685312
Alignment:
| Q |
71 |
caagcaacataattagattcaattgatcttaattcaca |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
39685349 |
caagcaacataattagattcgattgatctcaattcaca |
39685312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 363
Target Start/End: Complemental strand, 306642 - 306478
Alignment:
| Q |
205 |
atacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaagaacaa------tttgagccaaaacgacaaag |
298 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| | |||||| | |||||||||||| |||||||| | | | |||||||| ||||| |
|
|
| T |
306642 |
atacaaatgctacaagtggttcctctccaattgaagcatccaacctcaatgtttcacctcaagaacaagaacaagaacaatctcatccaaaacgccaaag |
306543 |
T |
|
| Q |
299 |
acttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgcgactgttgattt |
363 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||| ||| | ||||||||||||||| | |||||| |
|
|
| T |
306542 |
acttcgtcatgaagaaatgagttgttctcaaattgaagtagatccaggattgcgaccgatgattt |
306478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 363
Target Start/End: Original strand, 2827475 - 2827639
Alignment:
| Q |
205 |
atacaaatgctgcaagcagttcctctccaattgaagcatccgatctcaatatatcacctcaagaaaaagaacaa------tttgagccaaaacgacaaag |
298 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| | |||||| | |||||||||||| |||||||| | | | |||||||| ||||| |
|
|
| T |
2827475 |
atacaaatgctacaagtggttcctctccaattgaagcatccaacctcaatgtttcacctcaagaacaagaacaagaacaatctcatccaaaacgccaaag |
2827574 |
T |
|
| Q |
299 |
acttcgtcatgaagaaattagtcggtctcaaatttaagcatatccaggattgcgactgttgattt |
363 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||| ||| | ||||||||||||||| | |||||| |
|
|
| T |
2827575 |
gcttcgtcatgaagaaatgagttgttctcaaattgaagtagatccaggattgcgaccgatgattt |
2827639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 307049 - 306971
Alignment:
| Q |
73 |
agcaacataattagattcaattgatcttaattcacataggtttgatttcaattcataataatctcatttaatttgaaac |
151 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||||||| |||| ||| | ||||||||||||||||||||| |
|
|
| T |
307049 |
agcaacataattagattcgattgatctcaattcacacaggtttgatctcaaatcacactaatctcatttaatttgaaac |
306971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 2827069 - 2827147
Alignment:
| Q |
73 |
agcaacataattagattcaattgatcttaattcacataggtttgatttcaattcataataatctcatttaatttgaaac |
151 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||||||| |||| ||| | ||||||||||||||||||||| |
|
|
| T |
2827069 |
agcaacataattagattcgattgatctcaattcacacaggtttgatctcaaatcacactaatctcatttaatttgaaac |
2827147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 15351 - 15465
Alignment:
| Q |
38 |
acaacatggtgacctaa-cggtaacagctagcaacaagcaacataattagattcaattgatcttaattcacataggtttgatttcaattcataataatct |
136 |
Q |
| |
|
||||||||||||||||| | | |||| ||| || ||| |||||||||||||||| |||||| |||||||||| ||||||||| |||||||| | | || | |
|
|
| T |
15351 |
acaacatggtgacctaaacagcaacaactaacatcaaacaacataattagattcgattgatgttaattcacacaggtttgatctcaattcacagtgattt |
15450 |
T |
|
| Q |
137 |
catttaatttgaaac |
151 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15451 |
catttaatttgaaac |
15465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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