View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_24 (Length: 375)
Name: NF1918_high_24
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 103 - 356
Target Start/End: Original strand, 7339147 - 7339394
Alignment:
| Q |
103 |
taccattttcaagctttgtcaattaaactaaaactttattgtagcaagttgcaataatgtaactctactcggtaatgtt------aactcattctctttt |
196 |
Q |
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| T |
7339147 |
taccattttcaagctttgtcaactaaactaaaattttattgtagcaagttgcaataatgtaactctactcggtaatgttattgttaactcattctctttt |
7339246 |
T |
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| Q |
197 |
ggtgcaattccactattattttgtggtgggtacataccatctctcgtatatttaaaacatgccttagagtcaaatattgacatataattactcttatgat |
296 |
Q |
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| T |
7339247 |
ggtgcaattccactattattttgtggtgggtacataccatctctggtatatttaaaacatgccttagagtcaaatattgacatataattactctaatgat |
7339346 |
T |
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| Q |
297 |
tatttaactctttcagcaatgcataacgaattatggaatgactatcttcacccttgctga |
356 |
Q |
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| T |
7339347 |
tatttaact------------cataacgaattatggaatgactatcttcacccttgctga |
7339394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7339055 - 7339124
Alignment:
| Q |
18 |
atgatcggggattaa----aggagaataatgtgtgactttaggttatgtggtggttgacctctaattggg |
83 |
Q |
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| T |
7339055 |
atgatcggggattaactcaaggagaataatgtgtaactttaggttatgtggtggttgacctctaattggg |
7339124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 333
Target Start/End: Complemental strand, 30486075 - 30485851
Alignment:
| Q |
103 |
taccattttcaagctttgtcaattaaactaaaactttattgtagcaagttgcaataatgtaactctactcggtaatgttaactcattctcttttggtgca |
202 |
Q |
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| T |
30486075 |
tacctttttcaagttttgtcaatttagctgcaattttattgtaccaagttgcaataatgtgacccga-----taacgtcaaccgcttctcttttggtgca |
30485981 |
T |
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| Q |
203 |
attccactattattttgtggtgggtacataccatctctcgtatatttaaaacatgccttagagtcaaatattgacatataattactcttatgattattta |
302 |
Q |
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| T |
30485980 |
attccactattattttgtgaggggtacatatcatcgctaatatattt-aaacatgcctcagagccaaatattagcatataatccgtcttatgattatttt |
30485882 |
T |
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| Q |
303 |
actctttcagcaatgcataacgaattatgga |
333 |
Q |
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| T |
30485881 |
actctttaagcagtgtgtaacaaattatgga |
30485851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 16058951 - 16059076
Alignment:
| Q |
224 |
gggtacataccatctctcgtatatttaaaacatgccttagagtcaaatattgacatataattactcttatgattatttaactctttcagcaatgcataac |
323 |
Q |
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||||||| ||||||||| |||||||||||| || || |||| |||||||| ||||||| ||||||| ||||| |||||||||| | || |||||||| |
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| T |
16058951 |
gggtacaaaccatctctggtatatttaaaatgtgtctcagagctaaatattggcatataaccactcttaagattacttaactctttaatcagtgcataac |
16059050 |
T |
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| Q |
324 |
gaattatggaatgactatcttcaccc |
349 |
Q |
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|||| || |||| ||||||||||||| |
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| T |
16059051 |
gaataatagaataactatcttcaccc |
16059076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 27730484 - 27730354
Alignment:
| Q |
214 |
attttgtggtgggtacataccatctctcgtatatttaaaacatgccttagagtcaaatattgacatataattactcttatgattatttaactctttcagc |
313 |
Q |
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||||||||| ||| ||| ||||||||| ||||||| ||| ||||| |||||||||||||| |||||||| ||||||| |||| |||||||||| || |
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| T |
27730484 |
attttgtggaggg-acagaccatctctgatatatttgaaatgtgcctcagagtcaaatattgtcatataatcactcttacaattacttaactctttaaga |
27730386 |
T |
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| Q |
314 |
aatgcataacgaattatggaatgactatcttc |
345 |
Q |
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| T |
27730385 |
agtgcattacaaattatataatgaccatcttc |
27730354 |
T |
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