View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_26 (Length: 364)
Name: NF1918_high_26
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 27286680 - 27286344
Alignment:
| Q |
18 |
cattggcaagatgattggttcccagttttcacctccctcaaaaaagagctaagccattacaataaaagtgcaaatgatacactttatatcatcgaataat |
117 |
Q |
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| T |
27286680 |
cattggcaagatgattggttcccagttttcacctccctcaaaaaagagctaagccattacaataaaagtgcaaatgctacactttatatcatcgaataat |
27286581 |
T |
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| Q |
118 |
cgtcatcgtcataatattattgtaccattatctttcagaggattgggtcttt-----ttatatgctaaatgacaaaacagttgtgtatggggtctggttg |
212 |
Q |
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| T |
27286580 |
cgtcatcgtcataatattattgtaccattatctttcagaggattgggtctttttattttatatgctaaatgacaaaacagttgtgtatggggtctggttg |
27286481 |
T |
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| Q |
213 |
atgaccagaaaaaattaggccatatagtttattttaatttggtatagtaggtcatgattttatttcatgaataaactgatgatgaag--aactttaattt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27286480 |
atgaccagaaaaaattaggccatatagtttattttaatttggtatagtaggtcatgattttatttcatgaataaactgatgatgaagaaaactttaattt |
27286381 |
T |
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| Q |
311 |
ggttacttcagcatatatatcttcttgggtgcccaca |
347 |
Q |
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| T |
27286380 |
ggttacttcagcatatatatcttcttgggtgcccaca |
27286344 |
T |
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