View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_27 (Length: 353)
Name: NF1918_high_27
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 152 - 338
Target Start/End: Complemental strand, 28731292 - 28731106
Alignment:
| Q |
152 |
catccattttcccattaaccattcacactgtcaaaaagcaagtgcaagagccaaaagaattgcattcatatatggagaaataaatatacggagtttcaaa |
251 |
Q |
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| T |
28731292 |
catccattttcccattaaccattcacactgtcaaaaagcaagtgcaagagccaaaagaattgcattcatatatggagaaataaatatatggagtttcaaa |
28731193 |
T |
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| Q |
252 |
aagcaagagctaaaggaattctgaatggattcttatatggataaaggaattgcaaacatattcagaattcctttttattgtcaaaac |
338 |
Q |
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| T |
28731192 |
aagcaagagctaaaggaattctgaatggattcttatatggataaaggaattgcaaacatattcaaaattcctttttattgtcaaaac |
28731106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 338
Target Start/End: Complemental strand, 28735951 - 28735771
Alignment:
| Q |
152 |
catccattttcccattaaccattcacactgtcaaaaagcaagtgcaagagccaaaagaattgcattcatatatggagaaataaatatacggagtttcaaa |
251 |
Q |
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| T |
28735951 |
catccattttcccattaaccattcacactgtcaaaaagcaag------agctaaaataattgcattcatatatggagaaataaatgtaaggagtttcaaa |
28735858 |
T |
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| Q |
252 |
aagcaagagctaaaggaattctgaatggattcttatatggataaaggaattgcaaacatattcagaattcctttttattgtcaaaac |
338 |
Q |
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| T |
28735857 |
aagcaagagctaaaggaattctgaatggattcttatatggataaaggaattgcaaacatattcaaaattcctttttattgtcaaaac |
28735771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 28731419 - 28731341
Alignment:
| Q |
25 |
caaactccatatgtttccatcacatctaatcaagattacttgataaaaattcaaatatgataaccatatatctttgcag |
103 |
Q |
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| T |
28731419 |
caaactccatatgtttccatcacatctaatcaagattacttgataaaaattcaaatatgataaccatatatctttgcag |
28731341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 28736061 - 28736004
Alignment:
| Q |
43 |
atcacatctaatcaagattacttgataaaaa-ttcaaatatgataaccatatatcttt |
99 |
Q |
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| T |
28736061 |
atcacatctaattaagattacttgataaaaaattcaaatatgataaccatatatcttt |
28736004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28731459 - 28731430
Alignment:
| Q |
1 |
cggtattattcttattcttgcagccaaact |
30 |
Q |
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| T |
28731459 |
cggtattattcttattcttgcagccaaact |
28731430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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