View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_high_3 (Length: 576)

Name: NF1918_high_3
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_high_3
NF1918_high_3
[»] chr7 (6 HSPs)
chr7 (12-363)||(45237160-45237510)
chr7 (379-559)||(45237707-45237894)
chr7 (395-541)||(45243477-45243620)
chr7 (427-543)||(45230244-45230360)
chr7 (249-292)||(30463966-30464009)
chr7 (246-286)||(34369486-34369526)
[»] chr1 (3 HSPs)
chr1 (425-534)||(29467979-29468088)
chr1 (425-534)||(29423099-29423208)
chr1 (425-534)||(29453503-29453612)
[»] chr2 (18 HSPs)
chr2 (425-543)||(9291756-9291874)
chr2 (425-534)||(9315853-9315962)
chr2 (425-526)||(9284397-9284498)
chr2 (425-537)||(8573722-8573834)
chr2 (425-537)||(9061355-9061467)
chr2 (427-534)||(8579704-8579811)
chr2 (425-527)||(9065820-9065922)
chr2 (430-534)||(9364467-9364571)
chr2 (427-503)||(12019118-12019194)
chr2 (427-534)||(10335692-10335799)
chr2 (425-503)||(12012779-12012857)
chr2 (425-534)||(9320816-9320925)
chr2 (425-485)||(7115917-7115977)
chr2 (120-159)||(8576859-8576898)
chr2 (425-537)||(10347595-10347710)
chr2 (425-526)||(11987694-11987795)
chr2 (427-483)||(8576568-8576624)
chr2 (425-505)||(10352943-10353023)
[»] chr8 (1 HSPs)
chr8 (425-529)||(41966912-41967016)
[»] chr4 (1 HSPs)
chr4 (427-533)||(561019-561125)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 45237160 - 45237510
Alignment:
Q  12 gaatatacgggtgtaattagaaaattttcatacattattctttgtttcttacgaaattcaacaagcacatattatcaaatacatataacaatatatatgt 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  45237160 gaatatacgggtataattagaaaattttcatacattattctttgtttcttacgaaattcaacaagcacatattatcaaatacatataacaatat----gt 45237255  T
Q  112 atataaaagacctctaataaaatgcagctgtgttattt----caacatcaaatacaccattgattcagaataaaaataataatcaaatacaccatatgta 207  Q
    ||||||||||||||||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45237256 atataaaagacctctaataaaatgcagttgtgttatttatttcaacatcaaatacaccattgattcagaataaaaataataatcaaatacaccatatgta 45237355  T
Q  208 tttgatattttattttggtggtggcaggttcaaattatgatcttgcatatattatgcattatcaatactacctgaactaaactcatttgatatcaaaact 307  Q
    ||||||||||| ||||||||||||| |||||||| | | || |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  45237356 tttgatatttt-ttttggtggtggcgggttcaaactctaattttgcatatattatgtattatccataccacctgaactaaactcatttgatatcaaaact 45237454  T
Q  308 ttgatgtccaaacatcatttctcaacaaagaaaagtttatccccttaaaatcctct 363  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  45237455 ttgatgtccaaacatcatttctcaataaagtaaagtttatccccttaaaatcctct 45237510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 379 - 559
Target Start/End: Original strand, 45237707 - 45237894
Alignment:
Q  379 aaagtttaaataccgtatctcaacgtgt-------gctggaatcaataggtaaggaaggaaggtggtacaaggctttcaacacaaatcattacttcattc 471  Q
    ||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45237707 aaagtttaaataccggatctcaacgtgtgctgtgtgctggaatcaataggtaaggaaggaaggtggtacaaggctttcagcacaaatcattacttcattc 45237806  T
Q  472 aaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaaacaacttcctaggatttgcagacatgcaagttg 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45237807 aaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaaacaacttcctaggatttgcagacatgctagttg 45237894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 395 - 541
Target Start/End: Original strand, 45243477 - 45243620
Alignment:
Q  395 atctcaacgtgtgctggaatcaataggtaaggaaggaaggtggtac-aaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacat 493  Q
    |||||||| ||||| |||||||||||||||||||||    || ||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  45243477 atctcaacttgtgcaggaatcaataggtaaggaagg----tgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacat 45243572  T
Q  494 aaataacttgttcattcttgaggtcataccaaaacaacttcctaggat 541  Q
    || ||| ||||||| | ||||| ||||||||||||| |||||||||||    
T  45243573 aagtaagttgttcactgttgagatcataccaaaacagcttcctaggat 45243620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 427 - 543
Target Start/End: Original strand, 45230244 - 45230360
Alignment:
Q  427 aaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaa 526  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||| ||||||  ||||||||||    
T  45230244 aaggatggtgatacaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaa 45230343  T
Q  527 acaacttcctaggattt 543  Q
    ||| ||||| |||||||    
T  45230344 acagcttccaaggattt 45230360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 30463966 - 30464009
Alignment:
Q  249 cttgcatatattatgcattatcaatactacctgaactaaactca 292  Q
    |||||||||||||||||||||| |||||| |||| |||||||||    
T  30463966 cttgcatatattatgcattatctatactaactgagctaaactca 30464009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 34369526 - 34369486
Alignment:
Q  246 gatcttgcatatattatgcattatcaatactacctgaacta 286  Q
    |||||||||||||||||||||| || |||||| ||||||||    
T  34369526 gatcttgcatatattatgcattgtccatactaactgaacta 34369486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 425 - 534
Target Start/End: Complemental strand, 29468088 - 29467979
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||||||||| ||| |||||||||||||  ||||||||||| |||||||||||  ||||||| |||| |||||| ||||||| ||||||||    
T  29468088 ggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcatacca 29467989  T
Q  525 aaacaacttc 534  Q
    ||||||||||    
T  29467988 aaacaacttc 29467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 534
Target Start/End: Original strand, 29423099 - 29423208
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    |||||||||||| |||||| ||| |||||||||||||  ||| ||  ||| ||||||||||| ||||| || ||||||||||| ||||||| ||||||||    
T  29423099 ggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcatacca 29423198  T
Q  525 aaacaacttc 534  Q
    ||||| ||||    
T  29423199 aaacagcttc 29423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 425 - 534
Target Start/End: Complemental strand, 29453612 - 29453503
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||| ||||| ||| |||||||||||||  ||| ||  ||| |||||||||||  |||| || ||||||||||| ||||||| ||||||||    
T  29453612 ggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcatacca 29453513  T
Q  525 aaacaacttc 534  Q
    ||||| ||||    
T  29453512 aaacagcttc 29453503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 425 - 543
Target Start/End: Original strand, 9291756 - 9291874
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||||| ||| |||||||||||||||||  |||||| |||| |||||||||||  ||||||| ||| ||||||| |||| |  ||||||||    
T  9291756 ggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcatacca 9291855  T
Q  525 aaacaacttcctaggattt 543  Q
    ||||| ||||||| |||||    
T  9291856 aaacagcttcctatgattt 9291874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 534
Target Start/End: Original strand, 9315853 - 9315962
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||||||||| |||||||||||||||||  |||||| |||| ||| |||||||  ||||||||||||||||||| || | | |||| ||||    
T  9315853 ggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacacca 9315952  T
Q  525 aaacaacttc 534  Q
    ||||| ||||    
T  9315953 aaacagcttc 9315962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 526
Target Start/End: Complemental strand, 9284498 - 9284397
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||| ||||| |||||||||||||||||  |||||| |||| |||||||||||  ||||||||||||||| ||| |||| |  ||||||||    
T  9284498 ggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcatacca 9284399  T
Q  525 aa 526  Q
    ||    
T  9284398 aa 9284397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 425 - 537
Target Start/End: Complemental strand, 8573834 - 8573722
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||| ||||||||||||| ||| ||||||||| |||  || ||||| || |||||||||||  ||||||| | ||||||||| |||| |  ||||||||    
T  8573834 ggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaattccttcaacataactgacttgttcactcttcaaatcatacca 8573735  T
Q  525 aaacaacttccta 537  Q
    ||||| |||||||    
T  8573734 aaacagcttccta 8573722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 425 - 537
Target Start/End: Complemental strand, 9061467 - 9061355
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||| |||||| ||| || ||| ||||| ||| |||  ||||||  ||| |||||||||||  ||||||| ||||||||||| ||||||| ||||||||    
T  9061467 ggaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcatacca 9061368  T
Q  525 aaacaacttccta 537  Q
    ||||| |||||||    
T  9061367 aaacagcttccta 9061355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 534
Target Start/End: Complemental strand, 8579811 - 8579704
Alignment:
Q  427 aaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaa 526  Q
    ||||||||||||| |||| || ||||| |||||||   |||||| ||| ||||||||||| ||||| || |||||| |||| | ||||| ||||||||||    
T  8579811 aaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaa 8579712  T
Q  527 acaacttc 534  Q
    ||| ||||    
T  8579711 acagcttc 8579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 527
Target Start/End: Complemental strand, 9065922 - 9065820
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||| ||||||||| ||||||||||||||||     |||||| || |||||| ||||  ||||||||||||||||||| |||| |  ||||||||    
T  9065922 ggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttcaaatcatacca 9065823  T
Q  525 aaa 527  Q
    |||    
T  9065822 aaa 9065820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 534
Target Start/End: Original strand, 9364467 - 9364571
Alignment:
Q  430 gaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaaaca 529  Q
    |||||||||||||| ||  |||||||||||||  ||||||||| | ||||||||||| |||||  | |||| | |||| ||||||| || ||||||||||    
T  9364467 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaaca 9364566  T
Q  530 acttc 534  Q
     ||||    
T  9364567 gcttc 9364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 12019194 - 12019118
Alignment:
Q  427 aaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttg 503  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||  ||| |||||||||||  ||||||| |||||||    
T  12019194 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttg 12019118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 534
Target Start/End: Original strand, 10335692 - 10335799
Alignment:
Q  427 aaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaa 526  Q
    ||||||||||  ||||| ||| |||||||||||||    |||| |||| |||||||||||  ||||||| ||| ||||||| |||| |  ||||||||||    
T  10335692 aaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaa 10335791  T
Q  527 acaacttc 534  Q
    ||||||||    
T  10335792 acaacttc 10335799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 12012857 - 12012779
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttg 503  Q
    ||||||| ||||||||||| ||| |||||||||||||  ||||||  ||| |||||||||||  ||||||| |||||||    
T  12012857 ggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaacttg 12012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 534
Target Start/End: Original strand, 9320816 - 9320925
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||| ||||| ||| ||||||||| ||| ||| |||  |||  ||||||||||  ||||||| |||||||| || |||| |  ||||||||    
T  9320816 ggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcatacca 9320915  T
Q  525 aaacaacttc 534  Q
    ||||| ||||    
T  9320916 aaacagcttc 9320925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 485
Target Start/End: Complemental strand, 7115977 - 7115917
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcc 485  Q
    ||||||||||||||||||||||||||| ||||||||   || |||||||| || |||||||    
T  7115977 ggaaggaaggtggtacaaggctttcaaaacaaatcaaagctccattcaaattacgaattcc 7115917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 8576898 - 8576859
Alignment:
Q  120 gacctctaataaaatgcagctgtgttatttcaacatcaaa 159  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  8576898 gacctctaacaaaatgcagttgtgttatttcaacatcaaa 8576859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 537
Target Start/End: Original strand, 10347595 - 10347710
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattca---aagtaggaattcctcgaacataaataacttgttcattcttgaggtcata 521  Q
    ||||||||||||| ||||| ||| ||||||||| |||   ||||||||    || ||||||||||  ||||||| ||| ||||||| |||| |  |||||    
T  10347595 ggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggaggaattccttcaacataactaatttgttcactcttcaaatcata 10347694  T
Q  522 ccaaaacaacttccta 537  Q
    |||||||| |||||||    
T  10347695 ccaaaacagcttccta 10347710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 526
Target Start/End: Complemental strand, 11987795 - 11987694
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||| ||||||||||| ||| |||||||||||||  ||||||  ||  ||||||||||   ||||||| ||| ||||||| |||| |  ||||||||    
T  11987795 ggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcatacca 11987696  T
Q  525 aa 526  Q
    ||    
T  11987695 aa 11987694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 8576624 - 8576568
Alignment:
Q  427 aaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaatt 483  Q
    |||| ||| |||||||| |||||| || ||||||||||||| |||||| ||||||||    
T  8576624 aagggagggggtacaagactttcagcataaatcattacttccttcaaactaggaatt 8576568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 505
Target Start/End: Original strand, 10352943 - 10353023
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgtt 505  Q
    ||||| ||||||||||||| ||| |||||||||||||    |||| |||| || ||||| || |||||||| |||||||||    
T  10352943 ggaagtaaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgtt 10353023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 41967016 - 41966912
Alignment:
Q  425 ggaaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 524  Q
    ||||||||||||||||||| ||| ||||||||| |||  ||||||  ||| |||||||||||  ||||||| ||| ||||||| |||| |  ||||||||    
T  41967016 ggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcatacca 41966917  T
Q  525 aaaca 529  Q
    |||||    
T  41966916 aaaca 41966912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 533
Target Start/End: Original strand, 561019 - 561125
Alignment:
Q  427 aaggaaggtggtacaaggctttcaacacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaa 526  Q
    ||||||||||||| ||||||| ||||| ||||||| |||| ||| | | ||||||||||| ||||| |  || ||  || | | ||||| ||||||||||    
T  561019 aaggaaggtggtagaaggcttccaacataaatcataactttattgatattaggaattcctggaacacaggtagctcttttacttttgagatcataccaaa 561118  T
Q  527 acaactt 533  Q
    |||||||    
T  561119 acaactt 561125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University