View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_high_30 (Length: 338)

Name: NF1918_high_30
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_high_30
NF1918_high_30
[»] chr5 (23 HSPs)
chr5 (48-324)||(33045109-33045385)
chr5 (1-47)||(1274358-1274404)
chr5 (1-50)||(28306157-28306206)
chr5 (1-49)||(5721842-5721890)
chr5 (3-47)||(18660759-18660803)
chr5 (3-47)||(22649688-22649732)
chr5 (1-49)||(39807739-39807787)
chr5 (1-48)||(36563076-36563123)
chr5 (3-47)||(8686891-8686935)
chr5 (4-51)||(21155983-21156031)
chr5 (2-52)||(4719645-4719696)
chr5 (1-47)||(13089806-13089853)
chr5 (1-52)||(15479464-15479515)
chr5 (1-44)||(19522028-19522071)
chr5 (1-47)||(1079977-1080023)
chr5 (1-47)||(26791269-26791315)
chr5 (1-47)||(33037520-33037566)
chr5 (1-47)||(35634861-35634907)
chr5 (1-50)||(1764221-1764270)
chr5 (1-49)||(6517710-6517759)
chr5 (1-38)||(12718278-12718315)
chr5 (3-47)||(7076595-7076639)
chr5 (1-49)||(39054585-39054633)
[»] chr2 (25 HSPs)
chr2 (1-48)||(22888846-22888893)
chr2 (1-47)||(27490755-27490801)
chr2 (1-44)||(8848720-8848763)
chr2 (1-47)||(7648392-7648438)
chr2 (1-47)||(18254234-18254280)
chr2 (1-47)||(41042254-41042300)
chr2 (1-47)||(43487379-43487425)
chr2 (1-49)||(31922317-31922366)
chr2 (1-48)||(9760016-9760064)
chr2 (1-47)||(15269861-15269908)
chr2 (1-51)||(2076565-2076615)
chr2 (1-47)||(6511251-6511297)
chr2 (1-46)||(7502452-7502498)
chr2 (1-47)||(9207590-9207636)
chr2 (1-47)||(30831756-30831802)
chr2 (3-49)||(42421925-42421971)
chr2 (3-47)||(37731226-37731271)
chr2 (3-47)||(38821366-38821411)
chr2 (1-48)||(6895894-6895942)
chr2 (1-48)||(6999092-6999140)
chr2 (1-48)||(8427551-8427599)
chr2 (1-48)||(15260306-15260354)
chr2 (6-46)||(19109123-19109163)
chr2 (1-44)||(22526018-22526062)
chr2 (15-47)||(27695985-27696017)
[»] chr7 (24 HSPs)
chr7 (1-47)||(13152593-13152639)
chr7 (1-52)||(2362659-2362710)
chr7 (1-47)||(30941386-30941432)
chr7 (1-47)||(44895597-44895643)
chr7 (1-49)||(31445315-31445364)
chr7 (1-49)||(34978294-34978343)
chr7 (1-38)||(43025349-43025386)
chr7 (1-47)||(2008882-2008929)
chr7 (1-47)||(12007210-12007257)
chr7 (1-52)||(15325662-15325713)
chr7 (1-47)||(37899237-37899284)
chr7 (1-48)||(38861095-38861142)
chr7 (9-52)||(42118727-42118770)
chr7 (1-47)||(43159599-43159646)
chr7 (1-47)||(44649350-44649397)
chr7 (1-47)||(47448826-47448873)
chr7 (5-47)||(22918470-22918512)
chr7 (1-47)||(25192909-25192955)
chr7 (6-47)||(37352110-37352152)
chr7 (1-47)||(41189568-41189614)
chr7 (3-48)||(31844631-31844676)
chr7 (1-49)||(32777731-32777780)
chr7 (6-47)||(40112984-40113025)
chr7 (3-47)||(43807839-43807883)
[»] chr4 (30 HSPs)
chr4 (1-47)||(38134353-38134399)
chr4 (1-50)||(5622455-5622504)
chr4 (1-52)||(32012891-32012943)
chr4 (1-48)||(37997255-37997302)
chr4 (1-47)||(23369357-23369403)
chr4 (6-47)||(45082981-45083022)
chr4 (3-47)||(37297049-37297093)
chr4 (1-44)||(38519796-38519840)
chr4 (6-50)||(39440481-39440525)
chr4 (3-47)||(50050638-50050682)
chr4 (1-52)||(51255741-51255793)
chr4 (1-51)||(149509-149560)
chr4 (1-47)||(5932788-5932835)
chr4 (1-48)||(13389477-13389524)
chr4 (1-48)||(46634099-46634146)
chr4 (2-47)||(2999112-2999158)
chr4 (1-47)||(10250540-10250586)
chr4 (3-52)||(14443193-14443243)
chr4 (1-47)||(29175227-29175273)
chr4 (1-47)||(43174984-43175030)
chr4 (1-47)||(44539736-44539782)
chr4 (1-47)||(46212970-46213016)
chr4 (1-47)||(50890098-50890144)
chr4 (1-46)||(336832-336877)
chr4 (1-46)||(2268532-2268577)
chr4 (1-49)||(37060315-37060364)
chr4 (1-46)||(39731911-39731956)
chr4 (1-48)||(21617182-21617230)
chr4 (1-52)||(39158100-39158152)
chr4 (3-47)||(40348794-40348838)
[»] chr3 (28 HSPs)
chr3 (1-47)||(36671039-36671085)
chr3 (1-50)||(26014809-26014858)
chr3 (3-50)||(38671615-38671662)
chr3 (1-47)||(5114078-5114124)
chr3 (1-47)||(42358663-42358709)
chr3 (1-47)||(46623907-46623953)
chr3 (1-47)||(52939653-52939699)
chr3 (1-38)||(13735138-13735175)
chr3 (1-50)||(37302543-37302592)
chr3 (1-46)||(42357105-42357150)
chr3 (1-46)||(47472330-47472375)
chr3 (1-45)||(33939238-33939282)
chr3 (1-47)||(10811135-10811182)
chr3 (1-48)||(16969591-16969638)
chr3 (1-47)||(19961932-19961979)
chr3 (1-47)||(5244229-5244275)
chr3 (3-49)||(6178452-6178498)
chr3 (1-46)||(20080074-20080120)
chr3 (1-47)||(38926628-38926674)
chr3 (1-47)||(52326019-52326065)
chr3 (1-46)||(35597163-35597208)
chr3 (1-46)||(41308926-41308971)
chr3 (3-47)||(27541529-27541573)
chr3 (3-47)||(28539767-28539811)
chr3 (1-48)||(33389007-33389055)
chr3 (1-52)||(45054969-45055021)
chr3 (1-49)||(52254163-52254211)
chr3 (10-46)||(55151750-55151786)
[»] chr6 (16 HSPs)
chr6 (1-49)||(25811863-25811911)
chr6 (1-52)||(33712315-33712367)
chr6 (1-49)||(34047385-34047433)
chr6 (3-46)||(5570360-5570403)
chr6 (1-48)||(8098620-8098667)
chr6 (1-52)||(22079588-22079639)
chr6 (1-47)||(14817932-14817978)
chr6 (1-47)||(2242046-2242093)
chr6 (1-47)||(8645309-8645355)
chr6 (1-50)||(18065114-18065164)
chr6 (1-46)||(24900776-24900822)
chr6 (6-47)||(1156721-1156762)
chr6 (6-47)||(5694181-5694222)
chr6 (1-49)||(11635559-11635608)
chr6 (1-50)||(31077790-31077839)
chr6 (1-48)||(2689088-2689136)
[»] chr1 (27 HSPs)
chr1 (3-47)||(15083077-15083121)
chr1 (1-49)||(37685329-37685377)
chr1 (1-49)||(37700141-37700189)
chr1 (1-48)||(3159375-3159422)
chr1 (1-47)||(2571635-2571681)
chr1 (1-47)||(8350221-8350267)
chr1 (1-49)||(19947765-19947814)
chr1 (1-47)||(9566985-9567032)
chr1 (1-47)||(9987951-9987998)
chr1 (1-47)||(27742617-27742664)
chr1 (1-44)||(30735318-30735361)
chr1 (1-47)||(48858823-48858870)
chr1 (1-47)||(48983692-48983739)
chr1 (1-47)||(3982056-3982102)
chr1 (1-47)||(8828147-8828192)
chr1 (1-47)||(27465082-27465128)
chr1 (1-47)||(33100808-33100854)
chr1 (1-47)||(35369700-35369746)
chr1 (1-47)||(37619544-37619590)
chr1 (1-47)||(37985411-37985457)
chr1 (1-43)||(43775210-43775252)
chr1 (1-47)||(44519176-44519222)
chr1 (1-47)||(45333570-45333616)
chr1 (1-48)||(5771772-5771820)
chr1 (1-52)||(10890070-10890122)
chr1 (1-49)||(23645409-23645457)
chr1 (1-48)||(47642631-47642679)
[»] chr8 (25 HSPs)
chr8 (1-52)||(10902700-10902751)
chr8 (1-48)||(27325757-27325804)
chr8 (1-50)||(26026893-26026943)
chr8 (3-48)||(22719439-22719484)
chr8 (3-48)||(31249551-31249596)
chr8 (3-47)||(24479236-24479280)
chr8 (1-57)||(37449450-37449506)
chr8 (1-47)||(1068606-1068653)
chr8 (3-49)||(5601013-5601060)
chr8 (3-49)||(5639560-5639607)
chr8 (1-51)||(13106473-13106524)
chr8 (1-47)||(28772148-28772195)
chr8 (1-47)||(31596948-31596995)
chr8 (3-49)||(42733591-42733638)
chr8 (1-48)||(43397780-43397827)
chr8 (1-47)||(10692439-10692485)
chr8 (1-50)||(42786684-42786734)
chr8 (1-50)||(7271849-7271898)
chr8 (10-51)||(9001058-9001099)
chr8 (1-49)||(25987811-25987860)
chr8 (3-47)||(34435763-34435808)
chr8 (1-38)||(38128424-38128461)
chr8 (1-49)||(4054311-4054359)
chr8 (1-48)||(12284294-12284342)
chr8 (9-52)||(34018803-34018847)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-47)||(76644-76690)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-47)||(366294-366340)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-46)||(35524-35569)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 48 - 324
Target Start/End: Original strand, 33045109 - 33045385
Alignment:
Q  48 atatagaaatattagtgacacttcaatgtatcttgtgtttggattctcaaaatcagaactcaacttgttccttaggtgtgattttttctttgttgtttgg 147  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  33045109 atatagaaatattagcgacacttcaatgtatcttgtgtttggattctcaaaatcagaactcaatttgttccttaggtttgattttttctttgttgtttgg 33045208  T
Q  148 tatatagtgcgtaagttgctatgggtagtaattatcaaaccaattgattttcttttctgtctttctggatccgggctttggtgtaattgagaatcgaaaa 247  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33045209 tatatagtgtgtaggttgctatgggtagtaattatcaaaccaattgattttcttttctgtctttctgggtccgggctttggtgtaattgagaatcgaaaa 33045308  T
Q  248 ggaaaatgtttaaggggacacccaaacacttgtagacatctcgtgggagaaagaaataaaagactaatgcaaaagat 324  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33045309 ggaaaatgtttaaggggacacccaaacacttatagacatctcgtgggagaaagaaataaaagactaatgcaaaagat 33045385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1274404 - 1274358
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  1274404 agttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 1274358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28306157 - 28306206
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  28306157 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcata 28306206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5721842 - 5721890
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  5721842 agttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctcat 5721890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 18660803 - 18660759
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  18660803 ttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 18660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 22649688 - 22649732
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  22649688 ttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 22649732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39807739 - 39807787
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  39807739 agttgtcataaaaattgtaaaaaatggttgttcaaatatcatttctcat 39807787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36563076 - 36563123
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  36563076 agttgtcacaaaaattatcaaaaaaggttgttcaaatatcatttctca 36563123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8686935 - 8686891
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||    
T  8686935 ttgtcacaaaaattatcaaaaatggttgttcaaatctcatttctc 8686891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 21156031 - 21155983
Alignment:
Q  4 tgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcatat 51  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  21156031 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcatat 21155983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 4719696 - 4719645
Alignment:
Q  2 gttgtcacaaaaattgtcaaaaat-ggttgttcaaataccatttctcatata 52  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||||||||    
T  4719696 gttgtcacaaaagttgtcaaaaattggttgtacaaatatcatttctcatata 4719645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13089806 - 13089853
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctc 47  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  13089806 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 13089853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15479515 - 15479464
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatata 52  Q
    |||||||| |||| |||| ||||||| ||||||||||| |||||||||||||    
T  15479515 agttgtcataaaagttgtaaaaaatgattgttcaaatatcatttctcatata 15479464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19522028 - 19522071
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccattt 44  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||    
T  19522028 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 19522071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1079977 - 1080023
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  1079977 agttgtcacaaaaattgtaaaaaataattgttcaaatatcatttctc 1080023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26791269 - 26791315
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| |||||||||||||||||||  |||||||    
T  26791269 agttgtcacaaaagttgtaaaaaatggttgttcaaatattatttctc 26791315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33037566 - 33037520
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||| |||| |||| ||||||||||||||||||| ||||||||    
T  33037566 agttgtcataaaagttgtaaaaaatggttgttcaaatatcatttctc 33037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35634861 - 35634907
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||| |||||| |||||||||||| ||||||||||| ||||||||    
T  35634861 agttgtaacaaaagttgtcaaaaatgattgttcaaatatcatttctc 35634907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1764270 - 1764221
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    |||||||||| || |||| ||||||| ||||||||||| |||||||||||    
T  1764270 agttgtcacagaagttgtaaaaaatgattgttcaaatatcatttctcata 1764221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6517759 - 6517710
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||||||    
T  6517759 agttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcat 6517710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12718315 - 12718278
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaata 38  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  12718315 agttgtcacaaaaattgttgaaaatggttgttcaaata 12718278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 7076595 - 7076639
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||| | ||||||| ||||||||||| ||||||||    
T  7076595 ttgtcacaaaaattataaaaaatgattgttcaaatatcatttctc 7076639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39054633 - 39054585
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    |||||||| ||||||| ||||||||  ||||||||||| ||||||||||    
T  39054633 agttgtcaaaaaaattatcaaaaataattgttcaaatatcatttctcat 39054585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22888846 - 22888893
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  22888846 agttgtcacaaaaattgtcaaaaatggttgttcaaatatcatttctca 22888893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27490755 - 27490801
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  27490755 agttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 27490801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8848720 - 8848763
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccattt 44  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  8848720 agttgtcacaaaagttgtcaaaaatggttgttcaaatatcattt 8848763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7648438 - 7648392
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||    
T  7648438 agttgtcacaaaaattgtcacaaatggatgttcaaatatcatttctc 7648392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18254234 - 18254280
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  18254234 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 18254280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41042300 - 41042254
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  41042300 agttgtcacaaaagttgttaaaaatggttgttcaaatatcatttctc 41042254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43487425 - 43487379
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||    
T  43487425 agttgtcacaaaaattataaaaaatggttgttcaaatatcatttctc 43487379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31922317 - 31922366
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcat 49  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||||||||    
T  31922317 agttgtcacaaaaattgtcaaaaactggttgttcgaatatcatttctcat 31922366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9760064 - 9760016
Alignment:
Q  1 agttgtcacaaaaa-ttgtcaaaaatggttgttcaaataccatttctca 48  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  9760064 agttgtcacaaaaagttgtaaaaaatggttgttcaaatatcatttctca 9760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15269908 - 15269861
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  15269908 agttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctc 15269861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2076615 - 2076565
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatat 51  Q
    |||| |||||||| |||| ||||||||||||||||||| | ||||||||||    
T  2076615 agttatcacaaaagttgtaaaaaatggttgttcaaatatcgtttctcatat 2076565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6511297 - 6511251
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||||||    
T  6511297 agttgtcactaaagttgtaaaaaatggttgttcaaatatcatttctc 6511251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7502452 - 7502498
Alignment:
Q  1 agttgtcacaaaaattgtc-aaaaatggttgttcaaataccatttct 46  Q
    ||||||||||||||||||| |||||||||||| |||||| |||||||    
T  7502452 agttgtcacaaaaattgtcaaaaaatggttgtacaaatatcatttct 7502498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9207636 - 9207590
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||| ||||||||||| ||||||||    
T  9207636 agttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctc 9207590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30831802 - 30831756
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||| |||||| ||||||||||||||||||||||||  |||||||    
T  30831802 agttgtgacaaaagttgtcaaaaatggttgttcaaatataatttctc 30831756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 42421925 - 42421971
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||| |||| |||||||||||||| |||| ||||||||||    
T  42421925 ttgtcacaaaagttgtaaaaaatggttgttcgaatatcatttctcat 42421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 37731226 - 37731271
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||    
T  37731226 ttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 37731271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 38821411 - 38821366
Alignment:
Q  3 ttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctc 47  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||    
T  38821411 ttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 38821366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6895942 - 6895894
Alignment:
Q  1 agttgtcacaaaaattgtcaa-aaatggttgttcaaataccatttctca 48  Q
    ||||||||||||||||||||| |||||| | |||||||| |||||||||    
T  6895942 agttgtcacaaaaattgtcaacaaatggatattcaaatatcatttctca 6895894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6999092 - 6999140
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||||| ||||||| |||||||||| |||||||||    
T  6999092 agttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctca 6999140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8427599 - 8427551
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctca 48  Q
    |||||||||||||||||||| ||||| | |||||||||| |||||||||    
T  8427599 agttgtcacaaaaattgtcaaaaaatagatgttcaaatatcatttctca 8427551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15260354 - 15260306
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctca 48  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||||||||    
T  15260354 agttgtcacaaaagttgtctaaaagtggttgttcaaatatcatttctca 15260306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 19109123 - 19109163
Alignment:
Q  6 tcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    ||||||||||||| |||||| |||||||||||| |||||||    
T  19109123 tcacaaaaattgtaaaaaatagttgttcaaatatcatttct 19109163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22526018 - 22526062
Alignment:
Q  1 agttgtcacaaaaattgtc-aaaaatggttgttcaaataccattt 44  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||    
T  22526018 agttgtcacaaaaattgtcaaaaaatggatgttcaaatatcattt 22526062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 27695985 - 27696017
Alignment:
Q  15 ttgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||||||| ||||||||    
T  27695985 ttgtcaaaaatggttgttcaaatatcatttctc 27696017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13152639 - 13152593
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  13152639 agttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 13152593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2362710 - 2362659
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| |||| ||||||||||||||| ||| |||||||||||||    
T  2362710 agttgtcacaaaagttgtaaaaaatggttgttcatatatcatttctcatata 2362659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30941432 - 30941386
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  30941432 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44895597 - 44895643
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  44895597 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 44895643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31445364 - 31445315
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  31445364 agttgtcacaaaagttgtcaaaaaatggttgttcaaatactatttctcat 31445315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34978343 - 34978294
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcat 49  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||||    
T  34978343 agttgtcacaaaaattgtcaaaaagtgattgttcaaatatcatttctcat 34978294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43025386 - 43025349
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaata 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  43025386 agttgtcacaaaaattgtaaaaaatggttgttcaaata 43025349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2008882 - 2008929
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  2008882 agttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 2008929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12007210 - 12007257
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctc 47  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  12007210 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 12007257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15325662 - 15325713
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| |||||||||||| ||||||||||| ||| |||| ||||    
T  15325662 agttgtcacaaaagttgtcaaaaatgattgttcaaatatcatatctcttata 15325713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37899237 - 37899284
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  37899237 agttgtcacaaaaattgtcacaaaatggatgttcaaatatcatttctc 37899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38861142 - 38861095
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||| ||||||| ||||||||||| |||||||||    
T  38861142 agttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctca 38861095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 42118727 - 42118770
Alignment:
Q  9 caaaaattgtcaaaaatggttgttcaaataccatttctcatata 52  Q
    |||||||||||| |||||||||| |||||| |||||||||||||    
T  42118727 caaaaattgtcacaaatggttgtacaaatatcatttctcatata 42118770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43159599 - 43159646
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctc 47  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  43159599 agttgtcacaaaaattgttaaaaaatggttgttcaaatatcatttctc 43159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44649350 - 44649397
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  44649350 agttgtcataaaaattgtcaaaaattggttgttcaaatatcatttctc 44649397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47448873 - 47448826
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  47448873 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 47448826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 22918470 - 22918512
Alignment:
Q  5 gtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||    
T  22918470 gtcataaaaattgtaaaaaatggttgttcaaatatcatttctc 22918512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25192909 - 25192955
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||| |||||| |||| ||||||||||||||||||| ||||||||    
T  25192909 agttgttacaaaagttgtaaaaaatggttgttcaaatatcatttctc 25192955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 37352152 - 37352110
Alignment:
Q  6 tcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  37352152 tcacaaaaattgtcaaaaaatggttgttcaaatatcatttctc 37352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41189568 - 41189614
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| | ||||||||||||||| ||| ||||||||    
T  41189568 agttgtcacaaaaattataaaaaatggttgttcatatatcatttctc 41189614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 31844631 - 31844676
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    |||||| ||||||||||| |||||| |||||||||| |||||||||    
T  31844631 ttgtcataaaaattgtcacaaatggatgttcaaatatcatttctca 31844676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32777731 - 32777780
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctcat 49  Q
    |||||||| |||| ||||||||| ||||||||||||||| ||||||||||    
T  32777731 agttgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctcat 32777780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 40112984 - 40113025
Alignment:
Q  6 tcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||| |||||||||||| ||||||||    
T  40112984 tcacaaaaattgtaaaaaatagttgttcaaatatcatttctc 40113025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 43807839 - 43807883
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||    
T  43807839 ttgtcataaaaattgtcaaatatagttgttcaaatatcatttctc 43807883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38134399 - 38134353
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  38134399 agttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 38134353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5622504 - 5622455
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  5622504 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcata 5622455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32012943 - 32012891
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaat-ggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  32012943 agttgtcacaaaagttgtcaaaaattggttgttcaaatatcatttctcatata 32012891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37997302 - 37997255
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  37997302 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 37997255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23369357 - 23369403
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  23369357 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 23369403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 45083022 - 45082981
Alignment:
Q  6 tcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  45083022 tcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 45082981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 37297093 - 37297049
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||    
T  37297093 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37297049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38519840 - 38519796
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccattt 44  Q
    |||||||||||||||||||| |||||||||||||||||| |||||    
T  38519840 agttgtcacaaaaattgtcaaaaaatggttgttcaaatatcattt 38519796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 39440525 - 39440481
Alignment:
Q  6 tcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||    
T  39440525 tcacaaaagttgtaaaaaatggttgttcaaatatcatttctcata 39440481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 50050682 - 50050638
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  50050682 ttgtcacaaaaattgtcaaaaataattgttcaaatatcatttctc 50050638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51255793 - 51255741
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||| ||||    
T  51255793 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcttata 51255741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 149509 - 149560
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcatat 51  Q
    |||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  149509 agttgtcacaaaaattatcaaaaagtgattgttcaaatatcatttctcatat 149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5932788 - 5932835
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  5932788 agttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 5932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13389477 - 13389524
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||| ||||||||||||  |||||||||||||||| |||||||||    
T  13389477 agttgtcgcaaaaattgtcaccaatggttgttcaaatatcatttctca 13389524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46634146 - 46634099
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||| ||||||| ||||||||||| |||||||||    
T  46634146 agttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctca 46634099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 2999158 - 2999112
Alignment:
Q  2 gttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  2999158 gttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctc 2999112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10250540 - 10250586
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| |||||| |||||||||||| ||||||||    
T  10250540 agttgtcacaaaagttgtaaaaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14443243 - 14443193
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcatata 52  Q
    ||||||||||| |||||||||| || ||||||||||| |||||||||||||    
T  14443243 ttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctcatata 14443193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29175273 - 29175227
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||| ||||||| ||||||| ||| ||||||||    
T  29175273 agttgtcacaaaaattgtaaaaaatgattgttcatatatcatttctc 29175227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43175030 - 43174984
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||| |||||||| |||| ||||||||||||||||||| ||||||||    
T  43175030 agttatcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 43174984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44539782 - 44539736
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  44539782 agttatcacaaaaattataaaaaatggttgttcaaatatcatttctc 44539736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46213016 - 46212970
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| | |||||| |||||||||||| ||||||||    
T  46213016 agttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 46212970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50890098 - 50890144
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| ||||||||||| ||||| |||||| ||||||||    
T  50890098 agttgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctc 50890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 336832 - 336877
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    |||||||||||||||||||||||||  |||| |||||| |||||||    
T  336832 agttgtcacaaaaattgtcaaaaataattgtacaaatatcatttct 336877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2268532 - 2268577
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    ||||||||||||| |||| |||||||| |||||||||| |||||||    
T  2268532 agttgtcacaaaagttgttaaaaatggatgttcaaatatcatttct 2268577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37060364 - 37060315
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||| ||||    
T  37060364 agttgtcacaaaagttgtcaaaaaatggttgttcaaataacatttttcat 37060315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39731911 - 39731956
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    |||||||||||||||| | |||||||||||| |||||| |||||||    
T  39731911 agttgtcacaaaaattataaaaaatggttgtccaaatatcatttct 39731956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21617230 - 21617182
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctca 48  Q
    |||||| ||||||||||||| ||||||| |||||||||| |||||||||    
T  21617230 agttgtaacaaaaattgtcacaaaatggatgttcaaatatcatttctca 21617182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39158152 - 39158100
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcatata 52  Q
    |||||||||||||||| ||||||| || ||||||||||| |||||||| ||||    
T  39158152 agttgtcacaaaaattatcaaaaaatgattgttcaaatatcatttctcttata 39158100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 40348838 - 40348794
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||| | ||||||| ||||||||||| ||||||||    
T  40348838 ttgtcacaaaaattataaaaaatgattgttcaaatatcatttctc 40348794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36671039 - 36671085
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  36671039 agttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 36671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26014858 - 26014809
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  26014858 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcata 26014809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 38671662 - 38671615
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||||    
T  38671662 ttgtcacaaaaattataaaaaatggttgttcaaatatcatttctcata 38671615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5114124 - 5114078
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  5114124 agttgtcaaaaaaattgtaaaaaatggttgttcaaatatcatttctc 5114078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42358663 - 42358709
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||    
T  42358663 agttgtcacaaaaattgtcaaaaatggttgttcgtatatcatttctc 42358709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46623953 - 46623907
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  46623953 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 46623907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52939699 - 52939653
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  52939699 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 52939653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13735175 - 13735138
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaata 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  13735175 agttgtcacaaaaattgtaaaaaatggttgttcaaata 13735138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37302592 - 37302543
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||| ||||||||||||| ||||| |||||||||||    
T  37302592 agttgtcacaaaagttgtaaaaaatggttgttaaaatatcatttctcata 37302543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42357105 - 42357150
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||    
T  42357105 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttct 42357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47472375 - 47472330
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||    
T  47472375 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttct 47472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33939282 - 33939238
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttc 45  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||    
T  33939282 agttgtcacaaaaattataaaaaatggttgttcaaatatcatttc 33939238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10811182 - 10811135
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  10811182 agttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 10811135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16969591 - 16969638
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    |||||||| |||| |||||||||||||||||| ||||| |||||||||    
T  16969591 agttgtcaaaaaagttgtcaaaaatggttgttaaaatatcatttctca 16969638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19961979 - 19961932
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  19961979 agttgtcacaaaaattgtctaaaagtggttgttcaaatatcatttctc 19961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5244275 - 5244229
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  5244275 agttgtcacaaaagttgtaaaatatggttgttcaaatatcatttctc 5244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6178452 - 6178498
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||| ||||||||||| ||||| |||||| ||||||||||    
T  6178452 ttgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctcat 6178498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20080120 - 20080074
Alignment:
Q  1 agttgtcacaaaaattgtcaa-aaatggttgttcaaataccatttct 46  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||    
T  20080120 agttgtcacaaaaattgtcattaaatggatgttcaaataccatttct 20080074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38926674 - 38926628
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||  |||| ||||||||||||||||||| ||||||||    
T  38926674 agttgtcacaaacgttgtaaaaaatggttgttcaaatatcatttctc 38926628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52326065 - 52326019
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| |||||||||| |||||||| ||||||||    
T  52326065 agttgtcacaaaagttgtaaaaaatggttattcaaatatcatttctc 52326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35597208 - 35597163
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||||    
T  35597208 agttgtcactaaaattgtaaaaaatgtttgttcaaatatcatttct 35597163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41308971 - 41308926
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    ||||||||||||| || | ||||||||||||||||||| |||||||    
T  41308971 agttgtcacaaaagttataaaaaatggttgttcaaatatcatttct 41308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 27541529 - 27541573
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||| ||| |||| ||||||||||||||||||| ||||||||    
T  27541529 ttgtcactaaagttgtaaaaaatggttgttcaaatatcatttctc 27541573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28539767 - 28539811
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||| | |||||| |||||||||||| ||||||||    
T  28539767 ttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 28539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33389055 - 33389007
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctca 48  Q
    ||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  33389055 agttgtcacaaaaattgtttaaaagtggttgttcaaatatcatttctca 33389007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45055021 - 45054969
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctcatata 52  Q
    |||||| |||||| |||||| ||||||| |||||||||| |||||||||||||    
T  45055021 agttgtaacaaaagttgtcagaaaatggatgttcaaatatcatttctcatata 45054969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52254163 - 52254211
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    |||||||| |||| |||| || |||||||||||||||| ||||||||||    
T  52254163 agttgtcataaaagttgtaaacaatggttgttcaaatatcatttctcat 52254211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 55151750 - 55151786
Alignment:
Q  10 aaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    |||| |||||||||||||||||||||||| |||||||    
T  55151750 aaaagttgtcaaaaatggttgttcaaatatcatttct 55151786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25811863 - 25811911
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  25811863 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 25811911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33712367 - 33712315
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  33712367 agttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctcatata 33712315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34047433 - 34047385
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  34047433 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 34047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 5570360 - 5570403
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  5570360 ttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttct 5570403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8098620 - 8098667
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  8098620 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 8098667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22079588 - 22079639
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||| ||||    
T  22079588 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcttata 22079639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14817978 - 14817932
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||    
T  14817978 agttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctc 14817932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2242046 - 2242093
Alignment:
Q  1 agttgtcacaaaaattgtc-aaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  2242046 agttgtcacaaaaattgtcaaaaaatgattgttcaaatatcatttctc 2242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8645355 - 8645309
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||    
T  8645355 agttgtcacaaaagttgtcaaaaagtgttgttcaaatatcatttctc 8645309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18065114 - 18065164
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||||||||| || ||||||||||| |||||||||||    
T  18065114 agttgtcacaaaagttgtcaaaaagtgattgttcaaatatcatttctcata 18065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24900822 - 24900776
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttct 46  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||    
T  24900822 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttct 24900776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 1156762 - 1156721
Alignment:
Q  6 tcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||| |||| ||||||||||||||||||| ||||||||    
T  1156762 tcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 1156721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 5694181 - 5694222
Alignment:
Q  6 tcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||| ||||||||    
T  5694181 tcacaaaaattgtaaaaaatggttattcaaatatcatttctc 5694222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11635559 - 11635608
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||||||||| || ||||||||||| ||||||||||    
T  11635559 agttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctcat 11635608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31077839 - 31077790
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    ||||||||||||| || | ||||||| ||||||||||| |||||||||||    
T  31077839 agttgtcacaaaatttataaaaaatgattgttcaaatatcatttctcata 31077790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2689088 - 2689136
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||||||||||  |||||| |||||||||| |||||||||    
T  2689088 agttgtcacaaaaattgtcattaaatggatgttcaaatatcatttctca 2689136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 15083077 - 15083121
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  15083077 ttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 15083121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37685377 - 37685329
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  37685377 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 37685329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37700141 - 37700189
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  37700141 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 37700189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3159422 - 3159375
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  3159422 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 3159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2571681 - 2571635
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  2571681 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 2571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8350221 - 8350267
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  8350221 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 8350267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19947765 - 19947814
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctcat 49  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  19947765 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcat 19947814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9566985 - 9567032
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctc 47  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  9566985 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 9567032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9987998 - 9987951
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  9987998 agttgtcacaaaagttgtcaaaaattggttgttcaaatatcatttctc 9987951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27742664 - 27742617
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  27742664 agttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30735318 - 30735361
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccattt 44  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||    
T  30735318 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 30735361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48858870 - 48858823
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  48858870 agttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 48858823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48983692 - 48983739
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctc 47  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  48983692 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 48983739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3982056 - 3982102
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||| ||||||||||||| ||||||||    
T  3982056 agttgtcacaaaagttgtaaaaaaaggttgttcaaatatcatttctc 3982102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8828147 - 8828192
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  8828147 agttgtcacaaaa-ttgtcaaaaatgattgttcaaatatcatttctc 8828192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27465082 - 27465128
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||||||||| ||||| ||||||||    
T  27465082 agttgtcacaaaagttgtaaaaaatggttgtttaaatatcatttctc 27465128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33100854 - 33100808
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||| |||| |||| ||||||||||||||||||| ||||||||    
T  33100854 agttgtcaaaaaagttgtaaaaaatggttgttcaaatatcatttctc 33100808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35369746 - 35369700
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||| ||||||||||| ||||||||    
T  35369746 agttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctc 35369700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37619590 - 37619544
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| || |||||||||||||| |||||| ||||||||    
T  37619590 agttgtcacaaaagttatcaaaaatggttgtccaaatatcatttctc 37619544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37985411 - 37985457
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| | ||||||||||||||||| | ||||||||    
T  37985411 agttgtcacaaaaattataaaaaatggttgttcaaaaaacatttctc 37985457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43775252 - 43775210
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatt 43  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||    
T  43775252 agttgtcacaaacattatcaaaaatggttgttcaaatatcatt 43775210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44519176 - 44519222
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||| |||| |||||||||||||||||||| ||| ||||||||    
T  44519176 agttgtcataaaagttgtcaaaaatggttgttcatatatcatttctc 44519222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45333616 - 45333570
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| ||||||| ||||||||||| ||||||||    
T  45333616 agttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctc 45333570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5771772 - 5771820
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctca 48  Q
    |||||||||||||||| ||||||| || ||||||||||| |||||||||    
T  5771772 agttgtcacaaaaattatcaaaaagtgattgttcaaatatcatttctca 5771820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10890070 - 10890122
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctcatata 52  Q
    ||||||||||||| |||||| ||||||| |||||||||| |||||||| ||||    
T  10890070 agttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcttata 10890122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23645457 - 23645409
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    |||||||| |||| |||| |||||||||||| |||||| ||||||||||    
T  23645457 agttgtcaaaaaagttgtaaaaaatggttgtccaaatatcatttctcat 23645409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47642631 - 47642679
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctca 48  Q
    ||||||||||||| || |||||| ||||||||||||||| |||||||||    
T  47642631 agttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctca 47642679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10902751 - 10902700
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatata 52  Q
    |||||| ||||||||| |||||||||||| |||||||| |||||||||||||    
T  10902751 agttgttacaaaaattatcaaaaatggttattcaaatatcatttctcatata 10902700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27325804 - 27325757
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  27325804 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 27325757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26026943 - 26026893
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  26026943 agttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcata 26026893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 22719484 - 22719439
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  22719484 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 22719439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 31249551 - 31249596
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  31249551 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 31249596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 24479280 - 24479236
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||    
T  24479280 ttgtcacaaaagttatcaaaaatggttgttcaaatatcatttctc 24479236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37449450 - 37449506
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcatatagaaat 57  Q
    ||||||||||||| |||| ||||||||||||| ||||| |||||||| |||| ||||    
T  37449450 agttgtcacaaaagttgtaaaaaatggttgttgaaatatcatttctcttataaaaat 37449506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1068653 - 1068606
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  1068653 agttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 1068606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5601013 - 5601060
Alignment:
Q  3 ttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctcat 49  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  5601013 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcat 5601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 5639607 - 5639560
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctcat 49  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  5639607 ttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcat 5639560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13106524 - 13106473
Alignment:
Q  1 agttgtcacaaaaattgtc-aaaaatggttgttcaaataccatttctcatat 51  Q
    |||||||| |||| ||||| ||||||||||||||||||| ||||||||||||    
T  13106524 agttgtcaaaaaagttgtccaaaaatggttgttcaaatatcatttctcatat 13106473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28772148 - 28772195
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctc 47  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  28772148 agttatcacaaaaattgtcaaaaaatggttgttcaaatatcatttctc 28772195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31596995 - 31596948
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  31596995 agttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctc 31596948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 42733591 - 42733638
Alignment:
Q  3 ttgtcacaaaaattgtc-aaaaatggttgttcaaataccatttctcat 49  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  42733591 ttgtcacaaaaattgtttaaaaatggttgttcaaatatcatttctcat 42733638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43397827 - 43397780
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctca 48  Q
    |||||| |||||| |||| ||||||||||||||||||| |||||||||    
T  43397827 agttgtaacaaaagttgtaaaaaatggttgttcaaatatcatttctca 43397780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10692485 - 10692439
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  10692485 agttgtcacaaaaattataaaaaatgattgttcaaatatcatttctc 10692439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42786684 - 42786734
Alignment:
Q  1 agttgtcacaaaaattgtca-aaaatggttgttcaaataccatttctcata 50  Q
    |||||||||||||||||| | ||||||||||| |||||| |||||||||||    
T  42786684 agttgtcacaaaaattgtaagaaaatggttgtacaaatatcatttctcata 42786734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7271898 - 7271849
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcata 50  Q
    ||||||||||||| |||| ||||||  ||||||||||| |||||||||||    
T  7271898 agttgtcacaaaagttgttaaaaattattgttcaaatatcatttctcata 7271849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 9001058 - 9001099
Alignment:
Q  10 aaaaattgtcaaaaatggttgttcaaataccatttctcatat 51  Q
    ||||||||||||||| |||||| |||||| ||||||||||||    
T  9001058 aaaaattgtcaaaaaaggttgtacaaatatcatttctcatat 9001099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25987811 - 25987860
Alignment:
Q  1 agttgtcacaaaaattgtcaaaa-atggttgttcaaataccatttctcat 49  Q
    ||||||||||||| |||| |||| ||||||||||||||| ||||||||||    
T  25987811 agttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctcat 25987860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 34435763 - 34435808
Alignment:
Q  3 ttgtcacaaaaattgtcaaaaa-tggttgttcaaataccatttctc 47  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||    
T  34435763 ttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 34435808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38128461 - 38128424
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaata 38  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  38128461 agttgtcacaaaaattgtttaaaatggttgttcaaata 38128424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4054311 - 4054359
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctcat 49  Q
    |||| ||||| || |||| ||||||||||||||||||| ||||||||||    
T  4054311 agttatcacagaagttgtaaaaaatggttgttcaaatatcatttctcat 4054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12284294 - 12284342
Alignment:
Q  1 agttgtcacaaaaattgtc-aaaaatggttgttcaaataccatttctca 48  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  12284294 agttgtcacaaacgttgtccaaaaatggttgttcaaatatcatttctca 12284342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 34018847 - 34018803
Alignment:
Q  9 caaaaattgtca-aaaatggttgttcaaataccatttctcatata 52  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||    
T  34018847 caaaagttgtcagaaaatggttgttcaaatatcatttctcatata 34018803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 76644 - 76690
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    |||||||||||||||| | |||||| |||||||||||| ||||||||    
T  76644 agttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 76690  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 366340 - 366294
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttctc 47  Q
    ||||||||||||| |||| |||||||||||| |||||| ||||||||    
T  366340 agttgtcacaaaagttgttaaaaatggttgtacaaatatcatttctc 366294  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35569 - 35524
Alignment:
Q  1 agttgtcacaaaaattgtcaaaaatggttgttcaaataccatttct 46  Q
    |||| |||||||| |||| ||||||||||||||||||| |||||||    
T  35569 agttatcacaaaagttgtaaaaaatggttgttcaaatatcatttct 35524  T

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