View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_36 (Length: 305)
Name: NF1918_high_36
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_36 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 19504050 - 19503972
Alignment:
| Q |
205 |
ctctataaagggaaacatcattcaaatgagaacactattctcaacaacacaatatctcatcaaaaaccttttctgtcaa |
283 |
Q |
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| T |
19504050 |
ctctataaagggaaacatcattcaaatgagatcaccattctcaacaacacaatctctcatcaaaaaccttttctgtcaa |
19503972 |
T |
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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 169080 - 168996
Alignment:
| Q |
205 |
ctctataaagggaaacatcattcaaatgagaacactattctcaacaacacaatatctcatcaaaaaccttttctgtcaagaatca |
289 |
Q |
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| T |
169080 |
ctctatatatggcaacatcattcaaatgaaaacacatctctcaacgacaaaatctctcaccaaaaacctttcctgtcaaaaatca |
168996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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