View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_4 (Length: 574)
Name: NF1918_high_4
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 41351362 - 41350803
Alignment:
| Q |
1 |
aatctagggataaaataaatgatgagggggaaaaaatgcctaattaaatgctacaatccattcaactttaaaacagcaaaatcgttaaataaagtaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
41351362 |
aatctagggataaaataaatgatgagggggaaaaaatgcctaattaaatgctacaatccattcaacttaaaaacagcaaaatcgttaaataaggtaagtt |
41351263 |
T |
|
| Q |
101 |
tctccttaaatttgagaagttacaataggaaaattccagatatgagtattaaaacaaatgatggaattatcatatcaaagatttgcctaaaatacttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41351262 |
tctccttaaatttgagaagttacaataggaaaatgccagatatgagtattaaaacaaatgatggaattatcatatcaaagatttgcctaaaatacttaga |
41351163 |
T |
|
| Q |
201 |
agtttaataacttcaacacattaacataaataatccatatacaaaccaataagccacataaatgaagatgaaatatggttagatatgttaacaaatccaa |
300 |
Q |
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| T |
41351162 |
agtttaataacttcaacacattaacataaataatccatatacaaaccaataagccacataaatgaagatgaaaaatggttagatatgttaacaaatccaa |
41351063 |
T |
|
| Q |
301 |
aaccaaaccatacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaagagacccccctctagcagctagatga |
400 |
Q |
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| T |
41351062 |
aaccaaaccatacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaagagacccccctctagcagctagatga |
41350963 |
T |
|
| Q |
401 |
agtggagtacttccagggtagctgcaaatagcaattcattagtccacaaaacaaatagaatgcataagaatcaagtcactaaccatagaatattgagaga |
500 |
Q |
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| T |
41350962 |
agtggagtacttccaggatagctgcaaatagcaattcattagtccacaaaacaaatagaatgcataagaatcaagtcactaaccatagaatattgagaga |
41350863 |
T |
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| Q |
501 |
tcaatacccgtatctaccggttgaagcacaaacaagagctccactatctaatagaatatg |
560 |
Q |
| |
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| T |
41350862 |
tcaatacccgtatctaccggtcgaagcacaaacaagagctccgctatctaatagaatatg |
41350803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 411
Target Start/End: Complemental strand, 23713337 - 23713237
Alignment:
| Q |
311 |
tacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaagagacccccctctagcagctagatgaagtggagtac |
410 |
Q |
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|||||||||| |||||| || | ||||||||| |||||||| || ||||| || |||||||| ||||| || ||| |||| ||||||||||||||||||| |
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| T |
23713337 |
tacccagatgcatcacgttggagacgatctgcaccccatgctaataattcgcggatgcaatcgagagatcctcctttagctgctagatgaagtggagtac |
23713238 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
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| |
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| T |
23713237 |
t |
23713237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 23713141 - 23713088
Alignment:
| Q |
493 |
ttgagagatcaatacccgtatctaccggttgaagcacaaacaagagctccacta |
546 |
Q |
| |
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|||| |||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
23713141 |
ttgaaagatcaatacccatatctgctagttgaagcacaaacaagagctccacta |
23713088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 7346840 - 7346874
Alignment:
| Q |
505 |
tacccgtatctaccggttgaagcacaaacaagagc |
539 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
7346840 |
tacccgtatccaccggttgaagcacaaacaagagc |
7346874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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