View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_46 (Length: 276)
Name: NF1918_high_46
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 11401702 - 11401828
Alignment:
| Q |
20 |
tatctgaaccgtctcttcattatatcttagtgattaggtttattcattatgtaaggaaagctagcctatataaagggtgtcttgtagtccgttgtaaagt |
119 |
Q |
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| T |
11401702 |
tatctgaaacgcctcttcattatatcttagtgattaggtttattcattatgtaaggaaacctagcctatataaagggtgtcttgtagtccgttgtaaagt |
11401801 |
T |
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| Q |
120 |
aaatcaaagtttgttgaataacaagag |
146 |
Q |
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| T |
11401802 |
aaatcaaagtgtgttgaataacaagag |
11401828 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 11401830 - 11401897
Alignment:
| Q |
188 |
atattctaagagagttatgatgaacaactacaacatcgttcggttcgaaattagatttcagttattga |
255 |
Q |
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| T |
11401830 |
atattctaagagagttatgatgaacaactacaacatcgttcggttcgaaattagatttcagttattga |
11401897 |
T |
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