View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_high_47 (Length: 273)

Name: NF1918_high_47
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_high_47
NF1918_high_47
[»] chr1 (5 HSPs)
chr1 (21-202)||(44945899-44946080)
chr1 (203-264)||(8090041-8090102)
chr1 (201-264)||(48907299-48907362)
chr1 (203-264)||(27962617-27962678)
chr1 (220-264)||(172877-172921)
[»] chr2 (8 HSPs)
chr2 (201-264)||(40422528-40422591)
chr2 (202-264)||(30246547-30246609)
chr2 (203-264)||(4517243-4517304)
chr2 (203-264)||(14684645-14684706)
chr2 (203-264)||(14685706-14685767)
chr2 (203-264)||(21306501-21306562)
chr2 (203-264)||(21307558-21307619)
chr2 (203-264)||(40421469-40421530)
[»] chr7 (2 HSPs)
chr7 (203-264)||(13077619-13077680)
chr7 (201-264)||(13078680-13078743)
[»] chr3 (3 HSPs)
chr3 (203-264)||(39983743-39983804)
chr3 (203-264)||(39984804-39984865)
chr3 (203-259)||(41968188-41968244)
[»] chr8 (3 HSPs)
chr8 (198-264)||(6540571-6540637)
chr8 (202-264)||(45036162-45036224)
chr8 (203-264)||(13255654-13255714)
[»] chr4 (2 HSPs)
chr4 (203-264)||(54937788-54937849)
chr4 (203-264)||(54938829-54938890)
[»] chr6 (1 HSPs)
chr6 (208-264)||(28889748-28889804)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 44946080 - 44945899
Alignment:
Q  21 actgccttgtgggttttctttgagttgatgcaatacaacctcataactcttgtttgccatttaatgattttggctcttgctgctcttttcttgtggtcta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44946080 actgccttgtgggttttctttgagttgatgcaatacaacctcataactcttgtttgccatttaatgattttggctcttgctgctcttttcttgtggtcta 44945981  T
Q  121 atgcatctgtctttatccacaagtaagtaagcctttcgaaattcatgtaccttttctttttcgactttgtttggtgtgtgtc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44945980 atgcatctgtctttatccacaagtaagtaagcctttcgaaattcatgtaccttttctttttcgactttgtttggtgtgtgtc 44945899  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 8090041 - 8090102
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090041 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 8090102  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 48907299 - 48907362
Alignment:
Q  201 tctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48907299 tctgatagaaatcaattgatatagaagaataaaatagggaaaatccctttgattacagaataat 48907362  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 27962617 - 27962678
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962617 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 27962678  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 172877 - 172921
Alignment:
Q  220 tatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  172877 tatagaagaataaaatagggaaaatccctttgattacagaataat 172921  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 40422591 - 40422528
Alignment:
Q  201 tctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40422591 tctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 40422528  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 30246609 - 30246547
Alignment:
Q  202 ctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246609 ctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 30246547  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 4517243 - 4517304
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517243 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 4517304  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 14684706 - 14684645
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684706 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 14684645  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 14685767 - 14685706
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685767 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 14685706  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 21306562 - 21306501
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306562 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 21306501  T

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Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 21307619 - 21307558
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21307619 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 21307558  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 40421530 - 40421469
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40421530 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagagtaat 40421469  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 13077680 - 13077619
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077680 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 13077619  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 13078743 - 13078680
Alignment:
Q  201 tctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13078743 tctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacggaataat 13078680  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 39983743 - 39983804
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983743 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 39983804  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 39984804 - 39984865
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984804 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 39984865  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 41968188 - 41968244
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacaga 259  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41968188 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacaga 41968244  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 6540571 - 6540637
Alignment:
Q  198 gtgtctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6540571 gtgtgtgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 6540637  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 45036162 - 45036224
Alignment:
Q  202 ctgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45036162 ctgatagaaatcaactgatatagaagaataaaatagggaaaattcctttgattacagaataat 45036224  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 13255714 - 13255654
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||| |||||||||||||||||| ||||  || |||| |||||||||||||||||||    
T  13255714 tgatagaaaccaactgatatagaagaat-aaatttggtaaattcctttgattacagaataat 13255654  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 54937788 - 54937849
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54937788 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataat 54937849  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 54938829 - 54938890
Alignment:
Q  203 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54938829 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataat 54938890  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 28889748 - 28889804
Alignment:
Q  208 gaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataat 264  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  28889748 gaaaccaactgatatagaagaatgaaatagggaaaatccatttgattacagaataat 28889804  T

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