View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_49 (Length: 251)
Name: NF1918_high_49
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 27464487 - 27464247
Alignment:
| Q |
1 |
caaactggcgttcattgcaaagaattcatcattttgtggtgttcattaaccacttaaacacgctaacttatttatatagttagaatgt-agattgta--- |
96 |
Q |
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| T |
27464487 |
caaactggcgttcattgcaaacaatgtatcattttgtggtgttcattaaccacttaaacacgctaacttatttatatagttagaatgttagattgtacat |
27464388 |
T |
|
| Q |
97 |
-------tattttgattttaatccaaaactgttccagattatataaattttattttaaattattgcttgttagtttgttttaattcacataagcaatgat |
189 |
Q |
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| T |
27464387 |
cgattgttattttggttttaatccaaaactgttccagat-atataaattttattttaaattattgcttgttagttt-----aattcacataagcaatgat |
27464294 |
T |
|
| Q |
190 |
agttgaattcacattgcttgggtttatggttctcttcaatattgtat |
236 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27464293 |
agtttaattcacattgcttgggtttatggttctcttcaatattgtat |
27464247 |
T |
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