View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_high_56 (Length: 238)
Name: NF1918_high_56
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 4893105 - 4893285
Alignment:
| Q |
14 |
taggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgcagcaa |
113 |
Q |
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| T |
4893105 |
taggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgcagcaa |
4893204 |
T |
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| Q |
114 |
tggaaataggcgaagttctccagtatattatcgatgcaaacgtaatagttgcagcataatacagtgatcccataagaagca |
194 |
Q |
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| T |
4893205 |
tggaaacaggcgaagttctccagtatattatcgatgcaaacgtaatagttgcagcataatacagtgatcccataagaagca |
4893285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 4873446 - 4873629
Alignment:
| Q |
10 |
agcataggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgca |
109 |
Q |
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| T |
4873446 |
agcataggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccataccatctcctgcacacaaattacagattgca |
4873545 |
T |
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| Q |
110 |
gcaatggaaataggcgaagttctccagtatattatcgatgcaaacgtaatagttgcagcataatacagtgatcccataagaagc |
193 |
Q |
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| T |
4873546 |
gcaatggaaacaggcgaagttctccagtatattatcgatgcaaacacaatagttgcaacataatacagtgatcccctaagaagc |
4873629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 26330864 - 26330978
Alignment:
| Q |
78 |
taccatctcctgcacacaaattacagattgcagcaatggaaataggcgaagttctccagtatattatcgatgcaaacgtaatagttgcagcataatacag |
177 |
Q |
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| T |
26330864 |
taccatctcctgcacacagattacatatcgcagcaatggaaataggggaagttctccagtatatcatggacgccaaagtaatagtagcagcataatacag |
26330963 |
T |
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| Q |
178 |
tgatcccataagaag |
192 |
Q |
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| T |
26330964 |
tggtcccctaagaag |
26330978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 26330622 - 26330693
Alignment:
| Q |
10 |
agcataggacttgtttttgttgtaaggtaactttttaccaccaaatctccttccaacgatatcagccatacc |
81 |
Q |
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|||||||||||||||||||||||||||||| |||| || ||||| |||||||| || || || |||||||| |
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| T |
26330622 |
agcataggacttgtttttgttgtaaggtaatttttcactgccaaacctccttcccacaatgtcggccatacc |
26330693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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