View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_10 (Length: 473)
Name: NF1918_low_10
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 12540499 - 12540057
Alignment:
| Q |
14 |
aaatggaaaattttgtggaccaaatttagaaatgttaactctgaccaaattggagtgtttaaactctccaataccatctttcgaaaacctaaatagaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12540499 |
aaatggaaaattttgtggaccaaatttagaaatgttaactctgaccaaattggagtgtttaaactctccaataccatctttcgaaaacctaaatagaaaa |
12540400 |
T |
|
| Q |
114 |
gaagttgttatttccaactcctctagaatgggacacccctcgataagcttattaaaatctcttagaatgtaaacctttttcaaatggagagttttgagta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12540399 |
gaagttgttatttccaactcctctagaatgggacacccctcgataagcttattaaaatctcttagaatgtaaacctttttcaaatggagagttttgagta |
12540300 |
T |
|
| Q |
214 |
agggaaaattgatttgaggaagaacggtcactaataatgttttcaacttaagaaccacaaggtttctagaattgaaaattgtggaaactgtagaacctaa |
313 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12540299 |
agggaaaattgatttgaggaagatcggtcactaataatgttttcaacttaagaaccacaaggtttctagaattgaaaattgtggaaactgtagaacctaa |
12540200 |
T |
|
| Q |
314 |
tttggttagaaattctctatcagttttaaccaaatccgtctccatgatgaaattctgagttcctcgttgcacagcagcgcgaacaaatcgattgatatct |
413 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12540199 |
ttcggttagaaattctctatcagttttaaccaaatccgtctccatgatgaaattctgagttcctcgttgcacagcagcgcgaacaaatcgattgatatct |
12540100 |
T |
|
| Q |
414 |
tgtgggtcgcatccctgggaggcaccacatttgaggcggaaag |
456 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12540099 |
tgtgggtcgcatccctgggaggcaccacatttgaggcggaaag |
12540057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 12486326 - 12486080
Alignment:
| Q |
29 |
tggaccaaatttagaaatgttaactctgaccaaattgg---agtgtttaaactctccaataccatctttcgaaaacctaaatagaaaagaagttgttatt |
125 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| |
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| T |
12486326 |
tggaacaaatttagaaatgttagctctaaccaaattgggcaagtgtttaaactctccaataccatctttcgaaaacctacatagtaaagaaggt---att |
12486230 |
T |
|
| Q |
126 |
tccaactcctctagaatgggacacccctcgataagcttattaaaatctcttagaatgtaaaccttttt-caaatggagagttttgagtaagggaaaattg |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||| | |
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| T |
12486229 |
tccaactcctctagaatgggacacccctcgattagcttattaaaatctcttagaatcgcaacctttttccaaatggagagttttaagcaagggaaaatcg |
12486130 |
T |
|
| Q |
225 |
atttgaggaagaacggtcactaataatgttttcaacttaagaaccacaag |
274 |
Q |
| |
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|||||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
12486129 |
atttgaggaagaaccctcactattattgttttcaacttaagaaccacaag |
12486080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 12507758 - 12507512
Alignment:
| Q |
29 |
tggaccaaatttagaaatgttaactctgaccaaattgg---agtgtttaaactctccaataccatctttcgaaaacctaaatagaaaagaagttgttatt |
125 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| |
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| T |
12507758 |
tggaacaaatttagaaatgttagctctaaccaaattgggcaagtgtttaaactctccaataccatctttcgaaaacctacatagtaaagaaggt---att |
12507662 |
T |
|
| Q |
126 |
tccaactcctctagaatgggacacccctcgataagcttattaaaatctcttagaatgtaaaccttttt-caaatggagagttttgagtaagggaaaattg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||| | |
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| T |
12507661 |
tccaactcctctagaatgggacacccctcgattagcttattaaaatctcttagaatcgcaacctttttccaaatggagagttttaagcaagggaaaatcg |
12507562 |
T |
|
| Q |
225 |
atttgaggaagaacggtcactaataatgttttcaacttaagaaccacaag |
274 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
12507561 |
atttgaggaagaaccctcactattattgttttcaacttaagaaccacaag |
12507512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 12507395 - 12507335
Alignment:
| Q |
394 |
gaacaaatcgattgatatcttgtgggtcgcatccctgggaggcaccacatttgaggcggaa |
454 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| |||||| ||||||||||||| |||| |
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|
| T |
12507395 |
gaacaaatcgattgatatcatgtggatcacatcccggggaggtaccacatttgaggtggaa |
12507335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 12485963 - 12485903
Alignment:
| Q |
394 |
gaacaaatcgattgatatcttgtgggtcgcatccctgggaggcaccacatttgaggcggaa |
454 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| |||||| |||||||||||| |||| |
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|
| T |
12485963 |
gaacaaatcgattgatatcatgtggatcacatcccggggaggttccacatttgaggtggaa |
12485903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 12658281 - 12658221
Alignment:
| Q |
394 |
gaacaaatcgattgatatcttgtgggtcgcatccctgggaggcaccacatttgaggcggaa |
454 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| |||||| |||||||||||| |||| |
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|
| T |
12658281 |
gaacaaatcgattgatatcatgtggatcacatcccggggaggttccacatttgaggtggaa |
12658221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 3939089 - 3939049
Alignment:
| Q |
182 |
gtaaacctttttcaaatggagagttttgagtaagggaaaat |
222 |
Q |
| |
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||||||||| | |||||||||||||||||||| |||||||| |
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| T |
3939089 |
gtaaaccttatccaaatggagagttttgagtaggggaaaat |
3939049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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