View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_low_12 (Length: 449)

Name: NF1918_low_12
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_low_12
NF1918_low_12
[»] chr1 (5 HSPs)
chr1 (14-433)||(34976343-34976762)
chr1 (14-433)||(34983454-34983870)
chr1 (104-433)||(34990189-34990521)
chr1 (19-433)||(2304568-2304980)
chr1 (20-69)||(34990583-34990632)
[»] chr5 (1 HSPs)
chr5 (14-433)||(40580906-40581319)
[»] chr3 (6 HSPs)
chr3 (102-429)||(22656226-22656556)
chr3 (311-432)||(22620268-22620389)
chr3 (249-433)||(22647494-22647678)
chr3 (311-411)||(30988677-30988777)
chr3 (311-433)||(22028972-22029094)
chr3 (311-433)||(22187960-22188082)
[»] chr7 (2 HSPs)
chr7 (294-410)||(872079-872195)
chr7 (294-410)||(1233356-1233472)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 34976762 - 34976343
Alignment:
Q  14 gaagcccttagatccaaagtctccagattttggagaataccaatccatttgggaaaaccatgttggtttcgtcgtatggataaatttttgaagcttagat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34976762 gaagcccttagatccaaagtctccagattttggagaataccaatccatttgggaaaaccatgttggtttcgtcgtatggataaatttttgaagcttaaat 34976663  T
Q  114 atttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatgcacctttaaaatcaagcaccttcagtgtcctatgttttttcaagattctatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34976662 atttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatgcacctttaaaatcaagcaccttcagtgtcctatgctttttcaagattctatt 34976563  T
Q  214 cacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatcaccggaactagtt 313  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  34976562 cacgatggattcctcttcataatttgatttatctgtgaaaagaaatagagacagaatatgtgagttttcaatacatgctctgaaatcaccggaactagtt 34976463  T
Q  314 gttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcatca 413  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34976462 gctattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcatca 34976363  T
Q  414 tacgtatcaaatcatgaaca 433  Q
    ||||||||| ||||||||||    
T  34976362 tacgtatcagatcatgaaca 34976343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 34983870 - 34983454
Alignment:
Q  14 gaagcccttagatccaaagtctccagattttggagaataccaatccatttgggaaaaccatgttggtttcgtcgtatggataaatttttgaagcttagat 113  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |  || ||||| ||||||| |||||||||| ||    
T  34983870 gaagcccttagatccaaggtctccagatttaggagaataccaatccatttgggaaatccatgttggctatgttgtatgtataaattcttgaagcttaaat 34983771  T
Q  114 atttcaagtggatcagacttctaaaaggtttaaaatcaataaacaat---gcacctttaaaatcaagcaccttcagtgtcctatgttttttcaagattct 210  Q
    |||||||||||||||||||||||||| |||||| |||  |||| |||   ||| ||| |||||||||||||||||||||||| |  ||||||||||||||    
T  34983770 atttcaagtggatcagacttctaaaatgtttaagatccctaaaaaatctggcatcttgaaaatcaagcaccttcagtgtcctgtactttttcaagattct 34983671  T
Q  211 attcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatcaccggaacta 310  Q
    ||||||| ||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||  | || ||      |||     
T  34983670 attcacgctggattcctttgcattatttgatttatctgtgaaaagaaatagtgaccgaatatgtgagttttcattacatgcatttaagtc------actg 34983577  T
Q  311 gttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 410  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34983576 gttgctattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 34983477  T
Q  411 tcatacgtatcaaatcatgaaca 433  Q
    |||||||||||| ||||||||||    
T  34983476 tcatacgtatcagatcatgaaca 34983454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 104 - 433
Target Start/End: Complemental strand, 34990521 - 34990189
Alignment:
Q  104 aagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatgc---acctttaaaatcaagcaccttcagtgtcctatgttttt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| |||  || |   | |||  |||| |||||||||||||||||| || ||||    
T  34990521 aagcttagatatttcaagtggatcagacatctaaaaggtttataatcaacaaaacatccgacatcttctaaatgaagcaccttcagtgtcctctgctttt 34990422  T
Q  201 tcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatc 300  Q
    | || ||||| |||| |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34990421 tgaatattcttttcaggatggattcctctaaataatttgatttatctgtgaaaagaaatagtgaccgaatatgtgagttttcaatacatgctctgaaatc 34990322  T
Q  301 accggaactagttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttt 400  Q
    ||||||  | |||| ||||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  34990321 accggagtttgttgctattgataggcgtctgatagttccacttaaagatgaatgatcgtcatcattgaaatgcttgcaaaaacttaaatcctcacacttt 34990222  T
Q  401 tcaaggatcatcatacgtatcaaatcatgaaca 433  Q
    ||||||||||||||| |||||| ||||||||||    
T  34990221 tcaaggatcatcatatgtatcagatcatgaaca 34990189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 2304568 - 2304980
Alignment:
Q  19 ccttagatccaaagtctccagattttggagaataccaatccatttgggaaaaccatgttggtttcgtcgtatggataaatttttgaagcttagatatttc 118  Q
    |||||||||||| |||||||||||| | |||| |||||||||||||||||   ||| ||||| | |||    ||||| ||| ||  |||||| |||||||    
T  2304568 ccttagatccaaggtctccagatttagaagaagaccaatccatttgggaagtacattttggtatagtcc---ggatatattctt--agcttaaatatttc 2304662  T
Q  119 aagtggatcagacttctaaaaggtttaaaatcaataaacaat---gcacctttaaaatcaagcaccttcagtgtcctatgttttttcaagattctattca 215  Q
    ||||||| ||||||||||||||||| ||||||||||||||||   ||| ||| |||||||||||||||||||||||| || ||||||||||||||| |||    
T  2304663 aagtggaacagacttctaaaaggttcaaaatcaataaacaatttggcatcttgaaaatcaagcaccttcagtgtcctgtgctttttcaagattctactca 2304762  T
Q  216 cgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatcaccggaactagttgt 315  Q
     ||| |||  |||| |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||||| || |||| || ||||   ||||     
T  2304763 tgatagatatctctacatactttgatttatttgtgaaaaaaaatactgaccgaatatgtgagttttcaatacatgcccttaaataactggaataggttgc 2304862  T
Q  316 tattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcatcata 415  Q
    |||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||    
T  2304863 tattgataagcgtctaatagttccacttaaagatgaatgattgacttcattgaaatgcttgaaaaaacttaaatcctcacacttttctaggaacattata 2304962  T
Q  416 cgtatcaaatcatgaaca 433  Q
    ||||||| ||||||||||    
T  2304963 cgtatcagatcatgaaca 2304980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 34990632 - 34990583
Alignment:
Q  20 cttagatccaaagtctccagattttggagaataccaatccatttgggaaa 69  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  34990632 cttagatccaaggtctcaagatttaggagaataccaatccatttgggaaa 34990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 433
Target Start/End: Complemental strand, 40581319 - 40580906
Alignment:
Q  14 gaagcccttagatccaaagtctccagattttggagaataccaatccatttgggaaaaccatgttggtttcgtcgtatggataaatttttgaagcttagat 113  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||   ||| |||||   || ||  ||||  | | |||||||||| ||    
T  40581319 gaagcccttagatccaaggtctccagatttaggagaagaccaatccatttgggaagtacattttggt---gttgttcggatctaatcttgaagcttaaat 40581223  T
Q  114 atttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatg---cacctttaaaatcaagcaccttcagtgtcctatgttttttcaagattct 210  Q
    |||||||||||| ||||||||||||| ||||||||||||||| |||||   || ||| |||||||||||||||||||||||| || ||||||||||||||    
T  40581222 atttcaagtggaccagacttctaaaatgtttaaaatcaataatcaatgagtcatcttgaaaatcaagcaccttcagtgtcctgtgctttttcaagattct 40581123  T
Q  211 attcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatcaccggaacta 310  Q
    |||||| |||||||| |||    |||||   |||| | |||||||   ||||||||||||||||||||||| ||||| |||| ||||||||| |||| |     
T  40581122 attcaccatggattcatcta---aattt---ttatttgtgaaaagttgtagtgaccgaatatgtgagttttcaatacgtgctatgaaatcactggaattg 40581029  T
Q  311 gttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 410  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  40581028 gttgttactgataggcgtctaagagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaattcctcacacttttcatggatca 40580929  T
Q  411 tcatacgtatcaaatcatgaaca 433  Q
    |||||||||||||||| ||||||    
T  40580928 tcatacgtatcaaatcgtgaaca 40580906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 102 - 429
Target Start/End: Original strand, 22656226 - 22656556
Alignment:
Q  102 tgaagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaat---gcacctttaaaatcaagcaccttcagtgtcctatgttt 198  Q
    ||||||||| |||||| ||||||| ||||||||  |||  |||| |||||||||  |||   ||| ||| |||||||||||||||||||| ||| |||||    
T  22656226 tgaagcttaaatattttaagtggaccagacttcccaaatttttataatcaataagtaatatggcatcttgaaaatcaagcaccttcagtggcctgtgttt 22656325  T
Q  199 tttcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaa 298  Q
    | ||||||||||| | |  |||  ||| |||  | |||||||||||| | ||||||||||||||||||||| || |||||||| |||||||| |   |||    
T  22656326 tgtcaagattctacttataatgttttcatctaaaaaatttgatttatttgtgaaaagaaatagtgaccgaacatatgagttttcaatacatgttgctaaa 22656425  T
Q  299 tcaccggaactagttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacact 398  Q
    |||  |||| ||| || |||||||||||||| |||| ||||||||| ||||||||| |||||| || | | ||||||||| |||||||||||||||||||    
T  22656426 tcattggaattagctgatattgataggcgtcgaataattccacttatagatgaatggccatctgcactaatatgcttgcagaaacttaaatcctcacact 22656525  T
Q  399 tttcaaggatcatcatacgtatcaaatcatg 429  Q
    ||||||||||||||||| |||| ||||||||    
T  22656526 tttcaaggatcatcatatgtattaaatcatg 22656556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 432
Target Start/End: Original strand, 22620268 - 22620389
Alignment:
Q  311 gttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 410  Q
    |||| |||||||||||||| | ||  | |||||||||||||||||| ||||||| | | || |||||||||||||| |||||||||||||||||| ||||    
T  22620268 gttgctattgataggcgtcgagtaacttcacttaaagatgaatgacaatcttcactaatatacttgcaaaaacttagatcctcacacttttcaagtatca 22620367  T
Q  411 tcatacgtatcaaatcatgaac 432  Q
    |||||||||| | |||||||||    
T  22620368 tcatacgtattagatcatgaac 22620389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 433
Target Start/End: Original strand, 22647494 - 22647678
Alignment:
Q  249 tgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatcaccggaactagttgttattgataggcgtctaatagttccacttaaaga 348  Q
    ||||||||||||||||||||| |||||| |||| | |||||||    |||||   ||||   ||||||| |||  |||||| |||  || ||  ||||||    
T  22647494 tgaaaagaaatagtgaccgaacatgtgaattttcactacatgccggaaaatctttggaataggttgttaatgaatggcgtcgaatgatttcaaataaaga 22647593  T
Q  349 tgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcaaatcatgaaca 433  Q
    |||| || |||||||| | | ||||||||| ||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||    
T  22647594 tgaaagatcatcttcactaatatgcttgcagaaacttatatcctcactcttttcaaggatcatcatatgtatcagatcatgaaca 22647678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 411
Target Start/End: Original strand, 30988677 - 30988777
Alignment:
Q  311 gttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 410  Q
    ||||||||||||||||| | ||  |||||||||||  |||| || ||| ||||| ||| | ||||||||||| ||||||||||| | |||||||||||||    
T  30988677 gttgttattgataggcggcgaaatgttccacttaagtatgattgtccaccttcactgataagcttgcaaaaatttaaatcctcaaatttttcaaggatca 30988776  T
Q  411 t 411  Q
    |    
T  30988777 t 30988777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 433
Target Start/End: Complemental strand, 22029094 - 22028972
Alignment:
Q  311 gttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 410  Q
    ||||||||||| ||||| | ||   |||||||||| ||||  || ||||| ||| | | ||||||||||||| | ||||||||||  |||||||||||||    
T  22029094 gttgttattgacaggcgccgaactattccacttaaggatgtttgcccatcatcactaacatgcttgcaaaaattaaaatcctcacttttttcaaggatca 22028995  T
Q  411 tcatacgtatcaaatcatgaaca 433  Q
    |  | ||||| | ||||||||||    
T  22028994 tattgcgtattagatcatgaaca 22028972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 433
Target Start/End: Complemental strand, 22188082 - 22187960
Alignment:
Q  311 gttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatca 410  Q
    ||||||||||| ||||| | ||   |||||||||| ||||  || ||||| ||| | | ||||||||||||| | ||||||||||  |||||||||||||    
T  22188082 gttgttattgacaggcgccgaactattccacttaaggatgtttgcccatcatcactaacatgcttgcaaaaattaaaatcctcacttttttcaaggatca 22187983  T
Q  411 tcatacgtatcaaatcatgaaca 433  Q
    |  | ||||| | ||||||||||    
T  22187982 tattgcgtattagatcatgaaca 22187960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 872079 - 872195
Alignment:
Q  294 tgaaatcaccggaactagttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctc 393  Q
    |||||||| | ||| ||||||||| |||||| || | |||  |||  ||||| ||||| || || |||||| | | ||||||||||||| ||||||||||    
T  872079 tgaaatcatcagaagtagttgttactgatagccgccgaattattcaccttaaggatgattgtccctcttcactaatatgcttgcaaaaatttaaatcctc 872178  T
Q  394 acacttttcaaggatca 410  Q
    | | |||||||||||||    
T  872179 aaatttttcaaggatca 872195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 1233356 - 1233472
Alignment:
Q  294 tgaaatcaccggaactagttgttattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctc 393  Q
    |||||||| | ||| ||||||||| |||||| || | |||  |||  ||||| ||||| || || |||||| | | ||||||||||||| ||||||||||    
T  1233356 tgaaatcatcagaagtagttgttactgatagccgccgaattattcaccttaaggatgattgtccctcttcactaatatgcttgcaaaaatttaaatcctc 1233455  T
Q  394 acacttttcaaggatca 410  Q
    | | |||||||||||||    
T  1233456 aaatttttcaaggatca 1233472  T

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