View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_15 (Length: 425)
Name: NF1918_low_15
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 11461548 - 11461145
Alignment:
| Q |
14 |
attgttttcacttgagaaaatttaaaagaaaatgtgctctaacaatattgtcgcgtggagagttctcccaannnnnnnaagaatgtcaaagacaagcatg |
113 |
Q |
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| T |
11461548 |
attgttttcacttgaaaaaatttaaaagaaaatgtgctccgacaat--tgtcgcatggagagttctcccaatttttttaagaatgtcaaagacaagcatg |
11461451 |
T |
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| Q |
114 |
aaattttagagggtgtatggaagtaagatgtacaagttagggggataagaaagaattttcataattgtgtcatctttacttcaattcatggccccatctt |
213 |
Q |
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| T |
11461450 |
aaatttcagagggtgtatggaagtaagatgtacaagttagggg-ataagagagaatttttataattgtgtcatctttacttcaattcatggccccatctt |
11461352 |
T |
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| Q |
214 |
gaaattcttattgagaaaccgcagatagccctcctcagctagagggggacaccaaacacctgaagagcttcaatgtccttcatagcccatcttgcagaga |
313 |
Q |
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| T |
11461351 |
gaaattcttattgagaaaccgcacatagtccttcataac-agagagttaga--aaatacat--agagcttcaatgtccttcatagtccatcttgcagaga |
11461257 |
T |
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| Q |
314 |
gtcagtcctaataaatccataaacaattaactaacaaaccacaatcacataaattaacaaactatcaagtaacctaaaactctggatcaattgcagtaga |
413 |
Q |
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| T |
11461256 |
gtcagtcctaataaatccataaacaattaactaacaaaccacaatcacataaattaacaaactatcaagtaacctaaaactctggatcaattgcagtgga |
11461157 |
T |
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| Q |
414 |
aataattctaat |
425 |
Q |
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| T |
11461156 |
aataattctaat |
11461145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 11442123 - 11442001
Alignment:
| Q |
110 |
catgaaattttagagggtgtatggaagtaagatgtacaagttagggggataagaaagaattttcataattgtgtcatctttacttcaattcatggcccca |
209 |
Q |
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| T |
11442123 |
catgaaattttagagggtatatgttagtaagatgtacaagttagggggataagagagatttttcataattatgtcatctttacttcaattcatggcccca |
11442024 |
T |
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| Q |
210 |
tcttgaaattcttattgagaaac |
232 |
Q |
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| T |
11442023 |
tcttgaaagacttattgagaaac |
11442001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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