View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_low_2 (Length: 636)

Name: NF1918_low_2
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_low_2
NF1918_low_2
[»] chr7 (5 HSPs)
chr7 (216-510)||(22883937-22884248)
chr7 (393-475)||(3367611-3367693)
chr7 (393-448)||(7710916-7710971)
chr7 (71-134)||(22883702-22883765)
chr7 (138-176)||(22883888-22883926)
[»] chr4 (4 HSPs)
chr4 (393-475)||(54188523-54188605)
chr4 (393-475)||(8570573-8570655)
chr4 (394-448)||(28462465-28462519)
chr4 (407-448)||(2550273-2550314)
[»] chr6 (4 HSPs)
chr6 (211-269)||(30947274-30947332)
chr6 (394-448)||(7600004-7600058)
chr6 (403-440)||(12038109-12038146)
chr6 (403-440)||(20654812-20654849)
[»] chr3 (2 HSPs)
chr3 (393-475)||(28696533-28696615)
chr3 (393-448)||(23361688-23361743)
[»] chr8 (1 HSPs)
chr8 (403-454)||(23241019-23241070)
[»] chr5 (1 HSPs)
chr5 (393-448)||(19611249-19611304)
[»] chr2 (1 HSPs)
chr2 (393-448)||(45402101-45402156)
[»] chr1 (1 HSPs)
chr1 (410-454)||(49101208-49101252)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 216 - 510
Target Start/End: Original strand, 22883937 - 22884248
Alignment:
Q  216 ctcagaatcttcatcttag--tg--ttccaaatatggaggatattatctcaattcatgatagtttgctgagaagatttcatatatttatctaatcttcat 311  Q
    |||||||||||||||||||  ||  ||||||||||| | |||||| |||  ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  22883937 ctcagaatcttcatcttaggctggcttccaaatatgaatgatattttctacattcatggtagtttgctgagaagatttcatctatttatctaatcttcat 22884036  T
Q  312 cgaattcggcaatcatca-gaa-----caccttggatgtggca---gca--tttatgtgagtctctcttactcttcttccttttttcctccggcaaggta 400  Q
    |||||||||||| || |  |||     || | | |||||  ||   |||  ||||||||||||||||||||||||||||||||||||||| |||||  ||    
T  22884037 cgaattcggcaa-caccttgaatgtggcagcattgatgttccaatcgcagctttatgtgagtctctcttactcttcttccttttttcctctggcaactta 22884135  T
Q  401 ttattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactc---tatgttgcgattgtgtgcttatccaggaatgaggtggatgaact 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||| ||||||||||||||||||||| |||||||||||||    
T  22884136 ttattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctattattttgcaattgtgtgcttatccaggaattaggtggatgaact 22884235  T
Q  498 gttacttccgtat 510  Q
    |||| ||||||||    
T  22884236 gttatttccgtat 22884248  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 475
Target Start/End: Complemental strand, 3367693 - 3367611
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 475  Q
    |||||||||||||||| ||| | | ||||||||||||||||||||||||||||||| ||| | | |||| |||||||||||||    
T  3367693 gcaaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttat 3367611  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 7710916 - 7710971
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  7710916 gcaaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt 7710971  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 22883702 - 22883765
Alignment:
Q  71 gtcttatagtgacattgcttaaaaaatgttgcatgcacgcatttaaatatatacttcaacattt 134  Q
    ||||||| || ||||| |||||||||||||||||||||  |||| ||||| |||||||||||||    
T  22883702 gtcttatggtaacatttcttaaaaaatgttgcatgcacttattttaatatgtacttcaacattt 22883765  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 22883888 - 22883926
Alignment:
Q  138 atcataaattcttcaccatcatcatcaatcgctcaattc 176  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  22883888 atcatcaattcttcaccatcatcatcaatcgcccaattc 22883926  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 475
Target Start/End: Complemental strand, 54188605 - 54188523
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 475  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||| ||| | | |||| |||||||||||||    
T  54188605 gcaaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttat 54188523  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 8570573 - 8570655
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 475  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||| ||||||||||| ||| | | |||| |||||||||||||    
T  8570573 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttat 8570655  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 28462519 - 28462465
Alignment:
Q  394 caaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    ||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  28462519 caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 28462465  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 2550314 - 2550273
Alignment:
Q  407 tgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  2550314 tgttgcatatgaggtgtttgataatttgactcaatgaaattt 2550273  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 30947274 - 30947332
Alignment:
Q  211 tttgcctcagaatcttcatcttagtgttccaaatatggaggatattatctcaattcatg 269  Q
    |||| ||||||||||||||||||| |||||||||||  |||||||| ||||||||||||    
T  30947274 tttgtctcagaatcttcatcttagggttccaaatatcaaggatattttctcaattcatg 30947332  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 7600004 - 7600058
Alignment:
Q  394 caaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    ||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  7600004 caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 7600058  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 12038146 - 12038109
Alignment:
Q  403 attgtgttgcgtgtgaggtgtttgataatttgactcaa 440  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  12038146 attgtgttgcgtatgaagtgtttgataatttgactcaa 12038109  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 20654812 - 20654849
Alignment:
Q  403 attgtgttgcgtgtgaggtgtttgataatttgactcaa 440  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  20654812 attgtgttgcgtatgaagtgtttgataatttgactcaa 20654849  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 28696533 - 28696615
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 475  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||| ||||||||||| ||| | | |||| |||||||||||||    
T  28696533 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttat 28696615  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 23361688 - 23361743
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  23361688 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 23361743  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 23241019 - 23241070
Alignment:
Q  403 attgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactct 454  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||| |||||    
T  23241019 attgtgttgcatatgaagtgtttgataatttgactcaatgaaatttgactct 23241070  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 19611249 - 19611304
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  19611249 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 19611304  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 45402101 - 45402156
Alignment:
Q  393 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 448  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  45402101 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 45402156  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 49101208 - 49101252
Alignment:
Q  410 tgcgtgtgaggtgtttgataatttgactcaatgaaattttactct 454  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||    
T  49101208 tgcgtatgaggtgtttgataaatcgactcaatgaaattttactct 49101252  T

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