View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_21 (Length: 390)
Name: NF1918_low_21
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 29912890 - 29913252
Alignment:
| Q |
12 |
aagaaatataaagattttgatttatcttctttttgtatcatggctattgggaaggagcgtgagtttaaagtttcaacaactcatgcaccatgtacaaaaa |
111 |
Q |
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| T |
29912890 |
aagaaatataaagattttgatttatcttctttttgtatcatggctattgggaaggagcgcgagtttaaagtttcaacaactcatgcaccatgtacaaaaa |
29912989 |
T |
|
| Q |
112 |
tgttttggttgagggatacccctttaaagaatgttatagttgatggttctaacataaatttatattattagacaatgaagacataaatgcttatgactaa |
211 |
Q |
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| T |
29912990 |
tgttttggttgagggatacccctttaaagaatgttatagttgatggttctaacacaaatttatattattatacaatgaagacataaatgcttatgactaa |
29913089 |
T |
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| Q |
212 |
acggttactcatcacatatgcttatttatctatgttgagtagcta-tttgtttataatatgtactatgttattcttactccttgcattttattttcacca |
310 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29913090 |
acggttactcatcacatatgtttatttatctatgttgagtagctagtttgtttataatatgtactacgttattcttactccttgcattttattttcacca |
29913189 |
T |
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| Q |
311 |
cacagaaaagaaaagaaaaataatgctcatataatgtcactgtttattttattatctagtatgt |
374 |
Q |
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|||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| |||||||||| |
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| T |
29913190 |
cacagaaaagaaaa-aaaaacaatgcccatatattgtcactgtttattttattgtctagtatgt |
29913252 |
T |
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