View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1918_low_22 (Length: 389)
Name: NF1918_low_22
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 33777162 - 33777532
Alignment:
| Q |
1 |
acatggctagtgttatgagaccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777162 |
acatggctagtgttatgagaccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgt |
33777261 |
T |
|
| Q |
101 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777262 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
33777361 |
T |
|
| Q |
201 |
catccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777362 |
catccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactca |
33777461 |
T |
|
| Q |
301 |
tggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgt |
371 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
33777462 |
tagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgt |
33777532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 33774587 - 33774888
Alignment:
| Q |
64 |
ttgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttca |
163 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
33774587 |
ttgttagtgtagttaatgtttataacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttct--ggactcattggtttccttca |
33774684 |
T |
|
| Q |
164 |
aattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtctctattgctagc-tttctactatattgtttggtcttttggat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
33774685 |
aattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactatattgcttggtcttctggat |
33774784 |
T |
|
| Q |
263 |
taagattaagtttaccacaacaagaattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgtt----gatgttcctcccaaacaa |
358 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33774785 |
taatattaagtttaccacgacaagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgatcgatgttcctcccaaacaa |
33774884 |
T |
|
| Q |
359 |
ttgg |
362 |
Q |
| |
|
|||| |
|
|
| T |
33774885 |
ttgg |
33774888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 365
Target Start/End: Complemental strand, 10657853 - 10657512
Alignment:
| Q |
21 |
ccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatg |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
10657853 |
ccaagatccacttttaatcaaggtcatgaggtgaccataaatgttgccagtgttgttaatgtttataacatcatgggagtagaaaccaatcctctccatg |
10657754 |
T |
|
| Q |
121 |
gccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgt |
220 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| | | |
|
|
| T |
10657753 |
gccttatgaccttccttttctttgtcctcattggtttccttcaaattagttatccaaataatcccactgcatttcaagcccatccaaagacaatgctact |
10657654 |
T |
|
| Q |
221 |
ctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcatggaagtgtttggttcactt |
320 |
Q |
| |
|
|||| | |||||||||||||||||||| || | ||||||||||||| |||||||| | | |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
10657653 |
ctctgtagctagctttctactatattgctttgccttttggattaagcttaagttt---gctataagacttgataccctcatggaagcgtttggttcactt |
10657557 |
T |
|
| Q |
321 |
tcaatagtttatttggtgttgatgttcctcccaaacaattgggga |
365 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||| |||||| |
|
|
| T |
10657556 |
tcaataatttctttggtgttgatgttcatcccaaacaaatgggga |
10657512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 38 - 347
Target Start/End: Complemental strand, 10707755 - 10707449
Alignment:
| Q |
38 |
tcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcatt |
137 |
Q |
| |
|
|||| ||||||||||||| || ||| |||| ||||||||||||||||| ||||||||||| ||||||||||| ||| | ||| ||||||||||||||||| |
|
|
| T |
10707755 |
tcaaagtcatgaagtgaccataaatgttgtaagtgttgttaatgtttacaacatcatgggagtagaaaccaaccctctacatagccttatggccttcatt |
10707656 |
T |
|
| Q |
138 |
ttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttc |
237 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||| | ||||| |||||||||||| |
|
|
| T |
10707655 |
ttctttgtactccttgctttcctccaaattacttatccagataatcccactgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttc |
10707556 |
T |
|
| Q |
238 |
tactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcatggaagtgtttggttcactttcaatagtttatttggt |
337 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||| |||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10707555 |
tactatattgttttgccttttggattaagcttatgttt---gcaacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggt |
10707459 |
T |
|
| Q |
338 |
gttgatgttc |
347 |
Q |
| |
|
|||||||||| |
|
|
| T |
10707458 |
gttgatgttc |
10707449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 10634273 - 10634024
Alignment:
| Q |
23 |
aagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggc |
122 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| | | |||||||||||| || ||| || ||| ||||||| |||||||||||||| | |
|
|
| T |
10634273 |
aagatcaagttttaatcaaggttctgaagtgacaatcaatatag---gagttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtc |
10634177 |
T |
|
| Q |
123 |
cttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtct |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||| | |||||||| ||||| || | ||| | ||||||||||||||||||||||||| |
|
|
| T |
10634176 |
cttatggccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatgtttgtct |
10634077 |
T |
|
| Q |
223 |
ctattgctagctttctactatattgtttggtcttttggattaagattaagttt |
275 |
Q |
| |
|
|||| ||||| ||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
10634076 |
ctatggctagttttttactatattgcttggccttttggattaagattaagttt |
10634024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 101 - 372
Target Start/End: Complemental strand, 10693896 - 10693628
Alignment:
| Q |
101 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
200 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||| |||| ||||||||| || |
|
|
| T |
10693896 |
agaaaccaatcctcttcattgtcttatggccttcactttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatc |
10693797 |
T |
|
| Q |
201 |
catccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactca |
300 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||| |||||| || | ||||||||||||| | |||||| |||| || ||||||| ||| |
|
|
| T |
10693796 |
catccaaagacaatgatactctctgttgctagctttctaatatattcctttgccttttggattaagctcaagttt---gcaactagggttgataccttca |
10693700 |
T |
|
| Q |
301 |
tggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgtg |
372 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
10693699 |
tggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtg |
10693628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 85 - 347
Target Start/End: Complemental strand, 10698499 - 10698240
Alignment:
| Q |
85 |
ataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
184 |
Q |
| |
|
||||||||||||| | ||||| |||||| ||||||||| | ||||| ||||||||||||||| |||||||||| |||||||| || ||||| ||||| |
|
|
| T |
10698499 |
ataacatcatgggaatggaaactaatcctcaacatggccttgtagcctttattttctttgtactccttggtttcctccaaattagatacccagaaaatcc |
10698400 |
T |
|
| Q |
185 |
cactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaaca |
284 |
Q |
| |
|
|| ||||||| |||||||||||| || ||| || ||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
10698399 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtttggccttttggattaagcttaagttt---acaaca |
10698303 |
T |
|
| Q |
285 |
agaattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgttgatgttc |
347 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
10698302 |
agggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttc |
10698240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 87 - 365
Target Start/End: Complemental strand, 10690564 - 10690289
Alignment:
| Q |
87 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatccca |
186 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| | ||||||||||||||||||||| |||||||||| ||| |||| |||||||| ||||| | |
|
|
| T |
10690564 |
aacatcatgggagtagaaactaatcctcaacatggccttgtagccttcattttctttgtactccttggtttcctccaagttagatatccagaaaatccta |
10690465 |
T |
|
| Q |
187 |
ctgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaag |
286 |
Q |
| |
|
| | ||||| |||||||||||||||| ||| || |||||||||||||||||||||||||| |||| ||| ||||||| |||||||| | ||||| |
|
|
| T |
10690464 |
ccccttttcaagtccatccaaagacaacgttggtatctattgctagctttctactatattgcttggccttcatgattaagcttaagttt---gctacaag |
10690368 |
T |
|
| Q |
287 |
aattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattgggga |
365 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| || ||| |||||||||||||| |||||| | ||||||||| |
|
|
| T |
10690367 |
ggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattgggga |
10690289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 10694002 - 10693909
Alignment:
| Q |
22 |
caagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatggg---tgtagaaaccaatccttt |
115 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| || ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10694002 |
caagatccaattttaatcgaagtcatgaagtgaccataaatgttgtgag---tgttaatgtttataacatcatgggagtagtagaaaccaatccttt |
10693909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 87 - 365
Target Start/End: Original strand, 15240269 - 15240547
Alignment:
| Q |
87 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatccca |
186 |
Q |
| |
|
||||||||||| ||| ||||||| || ||||||| ||| ||||||||||||| | ||| || || ||||| || ||||| |||||||||||||||||| |
|
|
| T |
15240269 |
aacatcatgggaatagcaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
15240368 |
T |
|
| Q |
187 |
ctgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaag |
286 |
Q |
| |
|
| | ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||| |||| |||| ||| |||||||| |
|
|
| T |
15240369 |
cagtctttcaactccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaag |
15240468 |
T |
|
| Q |
287 |
aattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattgggga |
365 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| ||| |||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
15240469 |
gattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattgggga |
15240547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 365
Target Start/End: Original strand, 15246621 - 15246878
Alignment:
| Q |
101 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
200 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| |||| | |||||||| ||||||| | |||||| ||||||||||||||||| | ||||| | |
|
|
| T |
15246621 |
agaaaccaatcctcttcatggccctgtggccttatttttttgtgtactcagaggtttcc--cgaattagctatccagataatcccacaacctttcaa--c |
15246716 |
T |
|
| Q |
201 |
catccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactca |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||| |||| ||| || | ||| ||||||| || | |
|
|
| T |
15246717 |
aatccaaagacaatgttagtctctattgctagctttctactatattgtttggcttttagggttaaacttaaatttgcc---agaaggcttgataccctta |
15246813 |
T |
|
| Q |
301 |
tggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattgggga |
365 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15246814 |
aggaagtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattgggga |
15246878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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