View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_24 (Length: 384)
Name: NF1918_low_24
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 39180133 - 39180490
Alignment:
| Q |
20 |
ggcctctaacaaagatatatgacagtttaccgttactattcattacttattaccagtaattaattagaataacagcatgtcaccattatatcataagcag |
119 |
Q |
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| T |
39180133 |
ggcctctaacaaagatatatgacagtttaccgttactattcattacttattaccagtaattaattagaataacagcatgtcaccattatatcataagcag |
39180232 |
T |
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| Q |
120 |
ccggcaggcacaacatttacagaatatgcttgtaattg-tttcacaatttttaacgtggaaacaaaatttaatagaaaaagtagatataaaggaatgtaa |
218 |
Q |
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| T |
39180233 |
ccggcaggcacaacatttacagaatatgcttgtaattgttttcacaattttgaacgtggaaacaaaatttaatagaaaaagtagatataaaggaatgtaa |
39180332 |
T |
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| Q |
219 |
gacattttcaacatctgattaattatatagaaaagtgagaataaaataaaataagtcactaatannnnnnnnnngataaaataaaaattaaagtgaacta |
318 |
Q |
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| T |
39180333 |
gactttttcaacatctgattaattatatagaaaagtgagaataaaataaaataagtcactaatattttttttttgataaaataaaaattaaagtgaacta |
39180432 |
T |
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| Q |
319 |
tatatttctacagttcagtttccggcgctgctactatagcttttctgtctttcatctc |
376 |
Q |
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| T |
39180433 |
tatatttctacagttcagtttccggcgctgctactatagcttttctgtctttcatctc |
39180490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 373
Target Start/End: Original strand, 39221658 - 39221886
Alignment:
| Q |
134 |
atttacagaatatgcttgtaattgtttcacaatttttaacgtggaaacaaaatttaatagaaaaagtagatataaa--ggaatgtaagacattttcaaca |
231 |
Q |
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| T |
39221658 |
atttacagaatatgcttgtaactgtttcacaatttt-aatgtggaaa--aagtttaatagaaaaaatagataaaaaaaggaaagtaaaacttttttaaca |
39221754 |
T |
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| Q |
232 |
tctgattaattatatagaaaagtgagaataaaataaaataagtcactaatannnnnnnnnngataaaataaaaattaaagtgaactatatatttctacag |
331 |
Q |
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| T |
39221755 |
tcagat-------acagaaaagtgagaataaaataaa-taagtcactagtaattgttttaataaaataaaaaaattaaagtgaactatat---tctacag |
39221843 |
T |
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| Q |
332 |
ttcagtttccggcg-ctgctactatagcttttctgtctttcat |
373 |
Q |
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| T |
39221844 |
ttcagtttccggtggctgctactatagcttttcagtctttcat |
39221886 |
T |
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