View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_31 (Length: 338)
Name: NF1918_low_31
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_31 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 1530386 - 1530049
Alignment:
| Q |
1 |
aaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530386 |
aaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattc |
1530287 |
T |
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| Q |
101 |
ctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataactaacatctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530286 |
ctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataactaacatctca |
1530187 |
T |
|
| Q |
201 |
ataatcaatcaccatttcaccactcaatagaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaattnnnnnnncaacaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1530186 |
ataatcaatcaccatttcaccactcaatagaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaattaaaaaaacaacaatc |
1530087 |
T |
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| Q |
301 |
attaaaaatgattaaatggcaatatttatcaaattcaa |
338 |
Q |
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|||||| ||| |||||| |||||||||||||||||||| |
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| T |
1530086 |
attaaacatgtttaaatagcaatatttatcaaattcaa |
1530049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 22476328 - 22476667
Alignment:
| Q |
1 |
aaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476328 |
aaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattc |
22476427 |
T |
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| Q |
101 |
ctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattcc-aaaaaacacaaattatatacagctaaaaataactaacatctc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |
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| T |
22476428 |
ctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaaacaaaaattatatacaactaaaaataactaacatctc |
22476527 |
T |
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| Q |
200 |
aataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaattnnnnnnncaacaa |
298 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
22476528 |
aataaccaatcaccatttcaccactcaataagaatccagcaaattatcatcaagcatacccagaaccaaggatcactctgataaattaaaaaaacaacaa |
22476627 |
T |
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| Q |
299 |
tcattaaaaatgattaaatggcaatatttatcaaattcaa |
338 |
Q |
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| T |
22476628 |
tcattaaacatgtttaaatagcaatatttatcaaattcaa |
22476667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 26842164 - 26841823
Alignment:
| Q |
1 |
aaaaattaggccaaattgaaatgaacataaatataagaa---tagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatcta |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26842164 |
aaaaattaggccaaattgaaatgaacataaatataagaagaatagtgcatattattctgcaaatccatcctaactaattcacaattaatcaaacaatcta |
26842065 |
T |
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| Q |
98 |
ttcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataactaacatc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
26842064 |
ttcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaatttccaaaaaacacagattatatacaactaaaaataactaacatc |
26841965 |
T |
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| Q |
198 |
tcaataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaattnnnnnnncaac |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
26841964 |
tcaataatcaatcaccatttcaccactcaataagaatctagcaaattatcatcaagcatacccagaaccaaggatcactctgataaattaaaaaaacaac |
26841865 |
T |
|
| Q |
297 |
aatcattaaaaatgattaaatggcaatatttatcaaattcaa |
338 |
Q |
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|||||| ||| ||| |||||| |||||||||||||||||||| |
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| T |
26841864 |
aatcatcaaacatgtttaaatagcaatatttatcaaattcaa |
26841823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 43 - 284
Target Start/End: Complemental strand, 29099432 - 29099185
Alignment:
| Q |
43 |
tgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaat |
142 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
29099432 |
tgcatattattctgcaaatccatcctaactaattcctaattaatcaagcaatctcttccacagacaaaaaacactacttttcaaaccagtacatatcaat |
29099333 |
T |
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| Q |
143 |
caaataccaaattccaaaaaacac-----aaattatatacagctaaaaataactaacatctcaataatcaatcaccatttcaccactcaata-gaatcca |
236 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29099332 |
caaataccaaattccaaaaaacacagattatattatatacagctaaaagtaactaacatctcaataatcaatcaccatttcaccactcaatatgaatcca |
29099233 |
T |
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| Q |
237 |
gcaaattatcatcaagcatactcagaaccaaggatcactctgataaat |
284 |
Q |
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||||| ||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
29099232 |
gcaaaccatcatcaagcataaccagaagcaagaatcactctgataaat |
29099185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 334
Target Start/End: Complemental strand, 21923182 - 21923016
Alignment:
| Q |
169 |
attatatacagctaaaaataactaacatctcaataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
21923182 |
attatatacagctaaaaataactaacatctcaataattaatcaccatttcaccactcaataagaatccaacaaattatcatcaagcataaccagaaccaa |
21923083 |
T |
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| Q |
268 |
ggatcactctgataaattnnnnnnncaacaatcattaaaaatgattaaatggcaatatttatcaaat |
334 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |
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| T |
21923082 |
ggatcactctgataaataaaaaaaacaacaatcattaaacatgtttaaatagcagtatttatcaaat |
21923016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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