View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_33 (Length: 335)
Name: NF1918_low_33
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27615176 - 27615039
Alignment:
| Q |
1 |
ggttgttacgatacttaacctttttctaactgattttgttgcatttctctttccttcttcatcttcatcgttaatcatctaccatttccaggattcttca |
100 |
Q |
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| T |
27615176 |
ggttgttacgatccttaacctttttctaactgattttgttgcatttctctttccttcttcatcttcatcgttaatcatccaccatttccaggattcttca |
27615077 |
T |
|
| Q |
101 |
tgttttctgcacttgtgcttgattgaattcatcttcaa |
138 |
Q |
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| T |
27615076 |
tgttttctgcacttgtgcttgattgaattcatcttcaa |
27615039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 34504288 - 34504152
Alignment:
| Q |
2 |
gttgttacgatacttaacctttttctaactgattttgttgcatttctctttccttcttcatcttcatcgttaatcatctaccatttccaggattcttcat |
101 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34504288 |
gttgttacgatccttaacctttttctaactgattttgttgcatttctctttccttcttcatcttcatcgttaatcatccaccatttccaggattcttcat |
34504189 |
T |
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| Q |
102 |
gttttctgcacttgtgcttgattgaattcatcttcaa |
138 |
Q |
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| T |
34504188 |
gttttctgcacttgtgcttgattgaattcatcttcaa |
34504152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 34504084 - 34503955
Alignment:
| Q |
206 |
cttctggaatttgttaatgattttactgtattcttgctttgtttttcttgattctacatatacatggctcctcgtgctaatcaacagcaaaatcctgatt |
305 |
Q |
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| T |
34504084 |
cttctggaatttgttaaagattttactctattcttgctttgtttttcttgattctacatacacatggctcctcgtgctaatcaacagcaaaatcctgatt |
34503985 |
T |
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| Q |
306 |
aggattctgcattttttgttcatccgagcg |
335 |
Q |
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| T |
34503984 |
aggattctgcattttttgttcatccgagcg |
34503955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 27614972 - 27614842
Alignment:
| Q |
206 |
cttctggaatttgttaatgattttactgtattcttgctttgtttttcttgattctacatatacatggctcctcgtgctaatcaacagcaaaatcctgatt |
305 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27614972 |
cttctggaatttgttaaagattttactctattcttgctttgtttttcttgattctacatacacatggctcctcgtgctaatcaacagcaaaatcctgatt |
27614873 |
T |
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| Q |
306 |
aggattctgcatttt-ttgttcatccgagcg |
335 |
Q |
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| T |
27614872 |
acgattctgcattttgtttttcatccgagcg |
27614842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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