View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_34 (Length: 333)
Name: NF1918_low_34
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 9950917 - 9951039
Alignment:
| Q |
187 |
caatctaggatatatacgaaaagaattagataaattggttaactaaattattcatattattatttaaagtgattgatagtaggggtatttattcaaagaa |
286 |
Q |
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| T |
9950917 |
caatcaaggatatatacgaaaagaattagataaattggttaactaaattattcatattattatttaaattgattgatagtaggggtatttattcaaagaa |
9951016 |
T |
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| Q |
287 |
aatgttgtcttgacattttaaat |
309 |
Q |
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| T |
9951017 |
aatgttgtcttgacattttaaat |
9951039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 9950739 - 9950851
Alignment:
| Q |
9 |
gaagaatatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggag |
108 |
Q |
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| T |
9950739 |
gaagaaaataggcatggagatttgcttaggacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggag |
9950838 |
T |
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| Q |
109 |
ctggcatggtgag |
121 |
Q |
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| T |
9950839 |
ctggcatggtgag |
9950851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 40915213 - 40915149
Alignment:
| Q |
21 |
catggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaa |
85 |
Q |
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| T |
40915213 |
catggagatttgcttaaaacttatctctatctttctggtcgggttgatatgcacatgatcgagaa |
40915149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 40742962 - 40743064
Alignment:
| Q |
16 |
atagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattggagctggcat |
115 |
Q |
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| T |
40742962 |
atagacatggatatttactcaaaacttatctctatctctctggtcgagttgatatgcacatgattgagaagaccattcattatttgattggagctggcat |
40743061 |
T |
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| Q |
116 |
ggt |
118 |
Q |
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||| |
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| T |
40743062 |
ggt |
40743064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 40946386 - 40946276
Alignment:
| Q |
8 |
cgaagaatatagacatggagatttgcttaagacttatttgtatctttctggtagggttgatatggagatgattgagaaaactgttcagtatctcattgga |
107 |
Q |
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| T |
40946386 |
cgaagaaaatagacatggagatttactcaaaacttatctctatctctccggtcgagttgatatgtgcatgattgagaagactatccaatatttgattgga |
40946287 |
T |
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| Q |
108 |
gctggcatggt |
118 |
Q |
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|||||| |||| |
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| T |
40946286 |
gctggcgtggt |
40946276 |
T |
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