View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_40 (Length: 298)
Name: NF1918_low_40
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 3110524 - 3110253
Alignment:
| Q |
8 |
ataatactaaaagtgttttgaataaaccgctattttccgcaatctacgatggacaacactattacagatcaaccaaattttccttaaactaatcccatgc |
107 |
Q |
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| T |
3110524 |
ataatactaaa-gtgttttgaataaaccgctattttccgcaatctacgatggacaacactattacagatcaaccaaattttccttaaactaatcccatgc |
3110426 |
T |
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| Q |
108 |
cctttgtttcctaagtagaaaccagtaaccacgacccaaaataaagaatactactgtgattttctccagtttcacacactatttgctgcaatgaagtata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
3110425 |
cctttgtttcctaagtagaaaccagtaaccacgacccaaaataaagaatactactgtgattttcttcagtttcacacattatttgctgcaatgaagtata |
3110326 |
T |
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| Q |
208 |
tcactgtactgccatagactttcaccaaccattttttccttttctaagaaacgtgaaagtttgaaaatccacc |
280 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110325 |
tcactgtactgccatagagtttcaccaaccattttttccttttctaagaaacgtgaaagtttgaaaatccacc |
3110253 |
T |
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