View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_low_44 (Length: 280)

Name: NF1918_low_44
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_low_44
NF1918_low_44
[»] chr8 (4 HSPs)
chr8 (1-263)||(3650765-3651028)
chr8 (195-263)||(43120446-43120514)
chr8 (26-100)||(25144296-25144370)
chr8 (129-158)||(16431859-16431888)
[»] chr2 (4 HSPs)
chr2 (184-263)||(28572612-28572691)
chr2 (193-263)||(15120084-15120155)
chr2 (188-254)||(16942374-16942440)
chr2 (188-254)||(17013039-17013105)
[»] chr3 (5 HSPs)
chr3 (187-249)||(1997316-1997378)
chr3 (184-264)||(40629081-40629161)
chr3 (19-93)||(32907540-32907614)
chr3 (183-259)||(25095440-25095516)
chr3 (195-231)||(34863853-34863889)
[»] chr1 (4 HSPs)
chr1 (188-250)||(46798611-46798673)
chr1 (193-249)||(36331634-36331690)
chr1 (184-232)||(11411036-11411084)
chr1 (129-177)||(25985265-25985313)
[»] chr5 (4 HSPs)
chr5 (196-249)||(9246839-9246892)
chr5 (53-100)||(16133746-16133793)
chr5 (188-232)||(13129190-13129234)
chr5 (193-225)||(16844054-16844086)
[»] chr6 (2 HSPs)
chr6 (182-259)||(23508390-23508467)
chr6 (129-176)||(18864734-18864781)
[»] chr4 (6 HSPs)
chr4 (181-249)||(55872573-55872641)
chr4 (189-249)||(1453139-1453199)
chr4 (195-247)||(3781787-3781839)
chr4 (129-171)||(21808928-21808970)
chr4 (193-264)||(46506323-46506396)
chr4 (183-263)||(38682645-38682725)
[»] scaffold0370 (1 HSPs)
scaffold0370 (201-248)||(392-439)
[»] chr7 (3 HSPs)
chr7 (190-246)||(7990861-7990917)
chr7 (183-233)||(27242237-27242287)
chr7 (195-264)||(41898254-41898323)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 3651028 - 3650765
Alignment:
Q  1 acaaaaaagattattgtgaagattatgatttgtgtgatgaaggtcgatgacaaagattgaagatgaagataatgatgaagattatgaatgttgtcttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651028 acaaaaaagattattgtgaagattatgatttgtgtgatgaaggtcgatgacaaagattgaagatgaagataatgatgaagattatgaatgttgtcttttt 3650929  T
Q  101 ctaggggaatttgataaaataaattgggtaagaataaaattattattaataatcttatatggcaaggcaactcatcatat-ttttaaggacattctttaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  3650928 ctaggggaatttgataaaataaattgggtaagaataaaattattattaataatcttatgtggcaaggcaactcatcatattttttaaggacattctttaa 3650829  T
Q  200 ggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcattaaat 263  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  3650828 ggatttctaattaagaaaatatttattgaaaaaatcaattaattcaatttttgatgcattaaat 3650765  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 43120446 - 43120514
Alignment:
Q  195 tttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcattaaat 263  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||   |||||||||||    
T  43120446 tttaaggattcctaattaagaaaatgattattgaaaaaataaattagttcaattttcaatgcattaaat 43120514  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 25144370 - 25144296
Alignment:
Q  26 tgatttgtgtgatgaaggtcgatgacaaagattgaagatgaagataatgatgaagattatgaatgttgtcttttt 100  Q
    ||||| ||||||||||||| |||||  ||||||||||||| | ||||||  ||||||||||| |||| |||||||    
T  25144370 tgattagtgtgatgaaggttgatgaagaagattgaagatggatataatgcggaagattatgagtgttatcttttt 25144296  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 16431888 - 16431859
Alignment:
Q  129 taagaataaaattattattaataatcttat 158  Q
    ||||||||||||||||||||||||||||||    
T  16431888 taagaataaaattattattaataatcttat 16431859  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 28572691 - 28572612
Alignment:
Q  184 taaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcattaaat 263  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||    
T  28572691 taaggtcactctttaaggattcctaattaagaaaatgtttattgaaaaaatcaaatagttcaatttctaatgcattaaat 28572612  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 15120155 - 15120084
Alignment:
Q  193 tctttaaggatttctaattaagaaaatgttta-ttgaaaaaatcaattaattcaatttctgatgcattaaat 263  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||  |||||||||||    
T  15120155 tctttaaggattcctaattaagaaaatgtttatttaaaaaaatcaattagttcaatttccaatgcattaaat 15120084  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 16942374 - 16942440
Alignment:
Q  188 gacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgat 254  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  16942374 gacactctttaacgatttttaattaagaaaatgtttattgcaaaaaccaaataattcaatttctgat 16942440  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 17013039 - 17013105
Alignment:
Q  188 gacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgat 254  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  17013039 gacactctttaacgatttttaattaagaaaatgtttattgcaaaaaccaaataattcaatttctgat 17013105  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 1997378 - 1997316
Alignment:
Q  187 ggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaattt 249  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  1997378 ggacactctttaaggattcctaattaagaaaatgtttattgaaaaaattaattagttcaattt 1997316  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 40629081 - 40629161
Alignment:
Q  184 taaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcattaaatg 264  Q
    |||||||||||||||||||||   |||||| ||||| ||||||||||||||| | |  |  |||||||||| |||||||||    
T  40629081 taaggacattctttaaggattctcaattaaaaaaatatttattgaaaaaatctaatgttctaatttctgatacattaaatg 40629161  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 32907614 - 32907540
Alignment:
Q  19 aagattatgatttgtgtgatgaaggtcgatgacaaagattgaagatgaagataatgatgaagattatgaatgttg 93  Q
    |||||||||||| | ||||||||| |||||||  | |||||||||| ||||||| | ||| ||||||||| ||||    
T  32907614 aagattatgattagcgtgatgaagttcgatgaatatgattgaagataaagataaaggtgatgattatgaaagttg 32907540  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 25095440 - 25095516
Alignment:
Q  183 ttaaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcatt 259  Q
    |||| |||||| ||||| |||||  |||||| ||| | |||||||||||||||| ||| |||||||| |||| ||||    
T  25095440 ttaatgacattatttaaagatttaaaattaaaaaattatttattgaaaaaatcagttacttcaatttatgattcatt 25095516  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 34863889 - 34863853
Alignment:
Q  195 tttaaggatttctaattaagaaaatgtttattgaaaa 231  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  34863889 tttaaggttttctaattaaaaaaatgtttattgaaaa 34863853  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 46798673 - 46798611
Alignment:
Q  188 gacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttc 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  46798673 gacattctttaaagatttctaattaagaaaatgtttattgaaaaagtcaaacaattcaatttc 46798611  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 36331690 - 36331634
Alignment:
Q  193 tctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaattt 249  Q
    |||||||||||| ||||||||||||||||||||||||||| | || |||||||||||    
T  36331690 tctttaaggattcctaattaagaaaatgtttattgaaaaagttaaataattcaattt 36331634  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 11411084 - 11411036
Alignment:
Q  184 taaggacattctttaaggatttctaattaagaaaatgtttattgaaaaa 232  Q
    |||||||| ||||||||||||||| ||||||||| | || |||||||||    
T  11411084 taaggacactctttaaggatttctcattaagaaattattcattgaaaaa 11411036  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 25985265 - 25985313
Alignment:
Q  129 taagaataaaattattattaataatcttatatggcaaggcaactcatca 177  Q
    |||||||||||||||||| ||||||| ||| || |||| ||||||||||    
T  25985265 taagaataaaattattataaataatcctatgtgacaagtcaactcatca 25985313  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 9246892 - 9246839
Alignment:
Q  196 ttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaattt 249  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9246892 ttaaggatttctaattaaaaaaatgtttattgaaaaaatcaattacttcaattt 9246839  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 16133746 - 16133793
Alignment:
Q  53 aagattgaagatgaagataatgatgaagattatgaatgttgtcttttt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  16133746 aagattgaagatgaagataatgatgaaaattatgaatgttgccttttt 16133793  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 13129190 - 13129234
Alignment:
Q  188 gacattctttaaggatttctaattaagaaaatgtttattgaaaaa 232  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  13129190 gacattctttaaggattcctaattaagaaaatgtttatagaaaaa 13129234  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 16844086 - 16844054
Alignment:
Q  193 tctttaaggatttctaattaagaaaatgtttat 225  Q
    |||||||||||||||||||||||||||| ||||    
T  16844086 tctttaaggatttctaattaagaaaatgattat 16844054  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 23508467 - 23508390
Alignment:
Q  182 tttaaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcatt 259  Q
    |||||||  ||| ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||| |||||||    
T  23508467 tttaagggtattatttaaagattcctaattaagaaaatgtttattgaaaaagtcaattagctcaatttctaatgcatt 23508390  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 18864781 - 18864734
Alignment:
Q  129 taagaataaaattattattaataatcttatatggcaaggcaactcatc 176  Q
    |||||||||||||||||||||||||||||  |||| || |||||||||    
T  18864781 taagaataaaattattattaataatcttacgtggctagccaactcatc 18864734  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 55872641 - 55872573
Alignment:
Q  181 ttttaaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaattt 249  Q
    ||||||||||| | |||| ||||||||||| ||  ||||||||||||||||| ||||||| ||||||||    
T  55872641 ttttaaggacactttttagggatttctaataaaataaatgtttattgaaaaattcaattagttcaattt 55872573  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 1453199 - 1453139
Alignment:
Q  189 acattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaattt 249  Q
    |||||||| |||||||  |||||||||||||||||||||||||| | ||||| || |||||    
T  1453199 acattcttcaaggattcttaattaagaaaatgtttattgaaaaagttaattagttaaattt 1453139  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 3781839 - 3781787
Alignment:
Q  195 tttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaat 247  Q
    |||||||||||||| |||||||||||||||| |||||| | || |||||||||    
T  3781839 tttaaggatttctagttaagaaaatgtttatagaaaaagttaaataattcaat 3781787  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 21808970 - 21808928
Alignment:
Q  129 taagaataaaattattattaataatcttatatggcaaggcaac 171  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||    
T  21808970 taagaataaaattattattaataatcatatgtggcaagccaac 21808928  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 46506323 - 46506396
Alignment:
Q  193 tctttaaggatttctaattaagaaaatgtttattg--aaaaaatcaattaattcaatttctgatgcattaaatg 264  Q
    ||||||||||||  ||||||||||| | |||||||  |||||||| | || ||||||||| |||||||||||||    
T  46506323 tctttaaggattcttaattaagaaactatttattgaaaaaaaatctaatacttcaatttccgatgcattaaatg 46506396  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 38682645 - 38682725
Alignment:
Q  183 ttaaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcattaaat 263  Q
    ||||||| |||||||||| |||| ||||||||||||| || ||| ||||  |  | || ||||||||||||||||| ||||    
T  38682645 ttaaggatattctttaagaatttttaattaagaaaatattcattaaaaatgtgtaatacttcaatttctgatgcatcaaat 38682725  T

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Target: scaffold0370 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 392 - 439
Alignment:
Q  201 gatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatt 248  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||    
T  392 gattcctaattaagaaaatgtttatggaaaaagtcaattaattcaatt 439  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 7990917 - 7990861
Alignment:
Q  190 cattctttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaa 246  Q
    |||| ||||||||||  |||||||||||||||| |||||||||||||| || |||||    
T  7990917 cattatttaaggattcataattaagaaaatgttaattgaaaaaatcaaatagttcaa 7990861  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 27242237 - 27242287
Alignment:
Q  183 ttaaggacattctttaaggatttctaattaagaaaatgtttattgaaaaaa 233  Q
    ||||||||| |||||||| |||||||||||||||| | |||||| ||||||    
T  27242237 ttaaggacactctttaagaatttctaattaagaaactatttattaaaaaaa 27242287  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 41898254 - 41898323
Alignment:
Q  195 tttaaggatttctaattaagaaaatgtttattgaaaaaatcaattaattcaatttctgatgcattaaatg 264  Q
    |||||||||||  |||||||||| | || ||||||||| |  | |||||||||||| |||||||||||||    
T  41898254 tttaaggattttcaattaagaaacttttcattgaaaaagttcaataattcaatttccgatgcattaaatg 41898323  T

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