View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_47 (Length: 277)
Name: NF1918_low_47
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 11460908 - 11461155
Alignment:
| Q |
18 |
attttctgatcagacagtcaacaatggttactgcgtcagcatagtaactaggtggaatccatttctgtatagggaatgtcgtctctcatagataactcaa |
117 |
Q |
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| T |
11460908 |
attttctgatcagacagtcaacaatggttactgcgtcagcatagtaactaggtggaatccatttctgtatagggaatgtc---tctcatagataactcaa |
11461004 |
T |
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| Q |
118 |
ttggtgagataagggacannnnnnnnctaacttgaaagagtgttccaataatgagaaattgtattctttaatattttctcaccaagcgtttgatagaaat |
217 |
Q |
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| T |
11461005 |
ttggtgagataagggacattttttttctaacttgaaagagtgttccaataatgagaaattgtattctttaatattttctcaccaagcgtttgatagaaat |
11461104 |
T |
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| Q |
218 |
attgaaacaagttatatatcttcttcaaatttctttcgtgattagaattat |
268 |
Q |
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| T |
11461105 |
attgaaacaagttatatatcttcttcaaatttctttcgtgattagaattat |
11461155 |
T |
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