View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_54 (Length: 242)
Name: NF1918_low_54
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_54 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 5160811 - 5160589
Alignment:
| Q |
20 |
ctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgca |
119 |
Q |
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| T |
5160811 |
ctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgca |
5160712 |
T |
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| Q |
120 |
gatttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaattataaattatcatcagtttgtcattaatcagtaaaata |
219 |
Q |
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| T |
5160711 |
gatttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaattataaattatcatcagtttgtcattaatcagtaaaata |
5160612 |
T |
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| Q |
220 |
acatcataacagtatttaatgtc |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
5160611 |
acatcataacagtatttaatgtc |
5160589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 5157506 - 5157299
Alignment:
| Q |
23 |
gaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagat |
122 |
Q |
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||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
5157506 |
gaatcaccaaacctttagagttggttcgccgtgatttgcgtttgcagcttgctttgccattcctttttgatgtgcacgtgcagctcgtcctgctgcagat |
5157407 |
T |
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| Q |
123 |
ttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaattataaattatcatcagtttgtcattaatcagtaaaataaca |
222 |
Q |
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| T |
5157406 |
ttctcaaagtcctcttgtctgcaatcaacacatacaagttaatcaatagttacataa----------atcatcaatttgtcattaaccagtacaataaca |
5157317 |
T |
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| Q |
223 |
tcataacagtatttaatg |
240 |
Q |
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||||||||| |||||||| |
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| T |
5157316 |
tcataacagcatttaatg |
5157299 |
T |
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