View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_55 (Length: 242)
Name: NF1918_low_55
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_55 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 14989592 - 14989387
Alignment:
| Q |
20 |
aatccattggtatggaacattttattttccaaataaaaacccgagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttcacat |
119 |
Q |
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| T |
14989592 |
aatccattagtatggaacattttattttccaagtaaaaacccgagtgcgagccagactgaaaaattactttctttattgcggaataagaagccttcacat |
14989493 |
T |
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| Q |
120 |
taatatgttgatgatctaaatatgaaatgtagagtcgcctttcgaattccgagcactagagatatttcttgaatcaatttgtagcttccttgatgcacga |
219 |
Q |
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| T |
14989492 |
taatatgttgatgatctaaatatgaaatgtagagtcgcctttcgaattccgagcactagagatattgcttgaatcaatttgtagcttccttgatgcacga |
14989393 |
T |
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| Q |
220 |
gcttca |
225 |
Q |
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|||||| |
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| T |
14989392 |
gcttca |
14989387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 14982909 - 14982821
Alignment:
| Q |
131 |
tgatctaaatatgaaatgtagagtcgcctttcgaattccgagcactagagatatttcttgaatcaatttgtagcttccttgatgcacga |
219 |
Q |
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| T |
14982909 |
tgatcttaatatgaaatgtagagtcatcttttgaattccgagcactagagatatttcttgaatcaatctgtagctaccttagtgcacga |
14982821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 2916843 - 2916747
Alignment:
| Q |
21 |
atccattggtatggaacattttattttccaaataaaaac-ccgagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttca |
116 |
Q |
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| T |
2916843 |
atccattagtatcgaatattttcttttccaagtgaaaacaccgcgtacgagcgagactgaaaaagtgctttctttgttgtggaataagaagccttca |
2916747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 7708379 - 7708476
Alignment:
| Q |
21 |
atccattggtatggaacattttatttt-ccaaataaaaacc-cgagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttca |
116 |
Q |
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| T |
7708379 |
atccattagtatcgaacattttctttttccaagtgaaaacctcgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaaaccttca |
7708476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 1187 - 1092
Alignment:
| Q |
21 |
atccattggtatggaacattttattttccaaataaaaaccc-gagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttc |
115 |
Q |
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| T |
1187 |
atccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
1092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 83348 - 83443
Alignment:
| Q |
21 |
atccattggtatggaacattttattttccaaataaaaaccc-gagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttc |
115 |
Q |
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||||||| |||| ||| ||||| |||||||| | ||||||| | || ||||| ||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
83348 |
atccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
83443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 18353178 - 18353083
Alignment:
| Q |
21 |
atccattggtatggaacattttattttccaaataaaaaccc-gagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttc |
115 |
Q |
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||||||| |||| ||| ||||| |||||||| | ||||||| | || ||||| ||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
18353178 |
atccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
18353083 |
T |
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