View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_6 (Length: 527)
Name: NF1918_low_6
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Complemental strand, 38688764 - 38688268
Alignment:
| Q |
16 |
gtacaaaggccttcaaacaatgaagatgagtaagtatagcatgaataacaacattgcattgtggttagtgttaaaactgaaacgttactttttggattat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
38688764 |
gtacaaaggccttcaaacaatgaagatgagtaagtatagcatgaataaca---ttgcattctgattagtgttaaaactgaaacgttactttttggattat |
38688668 |
T |
|
| Q |
116 |
catgacaatttatggtttgcatgttgtaaaaataaggtttcaatagaccaaggttctaaaacactcaaacaaccaatagacgaagagagcaaagtggttg |
215 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38688667 |
catgacaatttatggtttgcatgctgtagaaataaggtttcaatagaccaaggttctaaaacactcaaacaaccaatagacgaagagagcaaagtggttg |
38688568 |
T |
|
| Q |
216 |
aagtgcctttcatgcgtcctgatacggtatgtttatttaaataaatttctaactattaccaatggcgatatggaggacatgtgcgggaggagccaccgca |
315 |
Q |
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| T |
38688567 |
aagtgcctttcatgcgtcctgatacggtatgtttatttaaataaatttgtaactatgaccaatggcgatatggaggacatgtgcgggaggagccaccgca |
38688468 |
T |
|
| Q |
316 |
cagggcctaaaattttagaannnnnnnnatttttctatttcttcttatagatgttcttgatgataaaattctatttgaggaattgaatgtaagccaagag |
415 |
Q |
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| T |
38688467 |
cagggcgtaaaattttaga---ccccccatttttctatttcttcttatagatgttcttgatgataaaattctatttgaggaattgaatgtaagccaggag |
38688371 |
T |
|
| Q |
416 |
ttttaacaattgaataagttttatgatattgagttctcttaatacattttagtatttgctataatgcatgcatatcttatagaat-aatatcaactacct |
514 |
Q |
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| T |
38688370 |
ttttaacaattgaataagttttatgatattgagttctcttaatacattttattatttgctataatgcatgcatatcttatagaataaatatcaactatct |
38688271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 38711302 - 38711536
Alignment:
| Q |
17 |
tacaaaggccttcaaacaatgaagatgagtaagtatagcatgaataacaacattgcattgtggttagtgttaaaactgaaac-gttactttttggattat |
115 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
38711302 |
tacaaaggtcttcaaataatgaagatgattaagtatagcatgaa------cattgcattgtggtcagtgttaaaactgaaaatgttactttttggattat |
38711395 |
T |
|
| Q |
116 |
catgacaatttatggtttgcatgttgtaaaaataaggtttcaatagaccaaggttctaaaacactcaaacaaccaatagacgaagagagcaaagtggttg |
215 |
Q |
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||| ||||||||||| ||||| |||| | | ||||||||| | |||| || |||||||||| ||| | | ||| |||||||||||||||| || |
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| T |
38711396 |
cattacaatttatgggttgcaatgtgtagggacatcgtttcaatatatcaagattttaaaacactc-aactgcagagagaggaagagagcaaagtggctg |
38711494 |
T |
|
| Q |
216 |
aagtgcctttcatgcgtcctgatacggtatgtttatttaaat |
257 |
Q |
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||| | |||||||||||| || || |||||||||||||||| |
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| T |
38711495 |
aagcgagtttcatgcgtcccgacacagtatgtttatttaaat |
38711536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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