View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_61 (Length: 234)
Name: NF1918_low_61
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_61 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 25631730 - 25631526
Alignment:
| Q |
14 |
atcaaggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25631730 |
atcaaggagatattttagttacattcatatatgaaaaatcgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
25631631 |
T |
|
| Q |
114 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25631630 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgtttggaatgagtgtataacaagaattctcgacattccttggggattcttgattggtgct |
25631531 |
T |
|
| Q |
214 |
gagct |
218 |
Q |
| |
|
||||| |
|
|
| T |
25631530 |
gagct |
25631526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 48191491 - 48191287
Alignment:
| Q |
14 |
atcaaggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48191491 |
atcaaggagatattttagttacattcatatatgaaaaatcgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
48191392 |
T |
|
| Q |
114 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgct |
213 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48191391 |
gattgattcaatatcgatgaatctcgaaaaaggaatcgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgct |
48191292 |
T |
|
| Q |
214 |
gagct |
218 |
Q |
| |
|
||||| |
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|
| T |
48191291 |
gagct |
48191287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 18146276 - 18146072
Alignment:
| Q |
14 |
atcaaggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18146276 |
atcaaggagatattttagttacattcatatatgaaaaatcgagatccagtgatataacacaaggtcttccaaaagtggaacagatattagaaatacgttc |
18146177 |
T |
|
| Q |
114 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18146176 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgct |
18146077 |
T |
|
| Q |
214 |
gagct |
218 |
Q |
| |
|
||||| |
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|
| T |
18146076 |
gagct |
18146072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 28673610 - 28673814
Alignment:
| Q |
14 |
atcaaggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
28673610 |
atcaaggagatattttagttacattcatatatgaaaaatcgagatccggtgatataacacaaggtcttccaaaaatggaacagatattagaaatatgttc |
28673709 |
T |
|
| Q |
114 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28673710 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttagggattcttgattggtgct |
28673809 |
T |
|
| Q |
214 |
gagct |
218 |
Q |
| |
|
||||| |
|
|
| T |
28673810 |
gagct |
28673814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 43173675 - 43173871
Alignment:
| Q |
14 |
atcaaggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
43173675 |
atcaaggagatattttagttacattcatatatgaaaaatcgagatccggtgatataacacaaggtcttccaaaagtggaatagatattagaaatacgttc |
43173774 |
T |
|
| Q |
114 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173775 |
gattgattcaatatcgatgaatctcg-aaaaagaattgaagcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtg |
43173871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 228976 - 229175
Alignment:
| Q |
19 |
ggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatattagaaatacgttcgattg |
118 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| || ||| ||||| |||| |
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|
| T |
228976 |
ggagataggttagttacgtttatatatgaaaaatcgagatctagtgacataacgcaaggtcttccaaaagtggaacaaatctttgaagcgcgttcaattg |
229075 |
T |
|
| Q |
119 |
attcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggtgctgagct |
218 |
Q |
| |
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||||| |||| |||||||||| |||||||| | |||||||||| ||||| |||||||||| || | ||||||||||||||||||||||||||||| |
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| T |
229076 |
attcattatcccccaatctcgaaaggagaattgaggattggaatgagcgtataccaagaattcttggggtcccttggggattcttgattggtgctgagct |
229175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 20461989 - 20461894
Alignment:
| Q |
114 |
gattgattcaatatcgatgaatctcgaaaaaagaattgatgcttggaatgagtgtataacaagaattctcggcattccttggggattcttgattggt |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| || || ||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
20461989 |
gattgattcaatatcgatgaatctc-aaaaaagaattgatgcatgaaacaagtgtataagaagaattctcggcattcctcagggattcttgattggt |
20461894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 27888131 - 27888043
Alignment:
| Q |
14 |
atcaaggagatattttagttacattcatatatgaaaaattgagatccggtgatataacacaaggtcttccaaaagtggaacaaatatta |
102 |
Q |
| |
|
|||||| | |||||||||| || |||||||||||||||| | |||||| |||||||| |||| ||||| |||||||| || |||||||| |
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|
| T |
27888131 |
atcaagaaaatattttagtcactttcatatatgaaaaatagtgatccgctgatataatacaaagtctttcaaaagtgaaataaatatta |
27888043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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