View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_low_62 (Length: 227)

Name: NF1918_low_62
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_low_62
NF1918_low_62
[»] chr3 (2 HSPs)
chr3 (1-223)||(19767402-19767624)
chr3 (8-99)||(45456512-45456604)
[»] chr4 (3 HSPs)
chr4 (12-223)||(37617333-37617544)
chr4 (8-84)||(9203896-9203972)
chr4 (8-84)||(9208115-9208191)
[»] chr6 (1 HSPs)
chr6 (8-223)||(22082432-22082646)
[»] chr5 (1 HSPs)
chr5 (8-223)||(40164544-40164756)
[»] chr1 (2 HSPs)
chr1 (8-99)||(6921503-6921596)
chr1 (8-99)||(38238282-38238375)
[»] chr2 (1 HSPs)
chr2 (10-124)||(7827767-7827881)
[»] scaffold0135 (7 HSPs)
scaffold0135 (8-84)||(1979-2055)
scaffold0135 (8-84)||(6194-6270)
scaffold0135 (8-84)||(10409-10485)
scaffold0135 (8-84)||(14624-14700)
scaffold0135 (8-84)||(18839-18915)
scaffold0135 (8-84)||(23054-23130)
scaffold0135 (8-84)||(27269-27345)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19767624 - 19767402
Alignment:
Q  1 caagtacaggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19767624 caagtacaggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagtta 19767525  T
Q  101 gatatgctcaaatatcattataaagtatttcatgctatactatcaatnnnnnnnccaaagttgcaatgtaagctatctaaggctactccatattctaaat 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  19767524 gatctgctcaaatatcattataaagtatttcatgctatactatcaataaaaaaaccaaagttgcaatgtaagctatctaaggctactccatattctaaat 19767425  T
Q  201 gattcaacacacagttatacatg 223  Q
    |||||||||||||||||||||||    
T  19767424 gattcaacacacagttatacatg 19767402  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 45456512 - 45456604
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcg-tacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagtt 99  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  45456512 aggttgctttaagatccaaatgtgtcaatacatttttggttcatgcctaaagattttatgaagaatcctttcagaaaatgatataattgagtt 45456604  T

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Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 37617333 - 37617544
Alignment:
Q  12 tgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagttagatatgctcaa 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  37617333 tgctttaagatccaaatgtgtcgtacatttttggttcatgcctaaagtttttatgaagaatcctttcaaaaaataatataattgagttagatctgctcaa 37617432  T
Q  112 atatcattataaagtatttcatgctatactatcaatnnnnnnnccaaagttgcaatgtaagctatctaaggctactccatattctaaatgattcaacaca 211  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37617433 atatcattataaagtatttcatgctatactatcaataaaaaaaccaaagttgcaatgtatgctatctaaggctactccatattctaaatgattcaacaca 37617532  T
Q  212 cagttatacatg 223  Q
    ||||||||||||    
T  37617533 cagttatacatg 37617544  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 9203972 - 9203896
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  9203972 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 9203896  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 9208191 - 9208115
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  9208191 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 9208115  T

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Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 22082646 - 22082432
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagttagatatgc 107  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22082646 aggttgttttaagatccaaatgtgtcgtacatttttggttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagttagatctgc 22082547  T
Q  108 tcaaatatcattataaagtatttcatgctatactatcaatnnnnnnnccaaagttgcaatgtaagctatctaaggctactccatattctaaatgattcaa 207  Q
    |||||||||||||| |||||||||||| ||||||||||||       |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  22082546 tcaaatatcattat-aagtatttcatgttatactatcaataagaaaaccaaagttgcaatgtatgctatctaaggctaccccatattctaaatgattcaa 22082448  T
Q  208 cacacagttatacatg 223  Q
    ||||||||||||||||    
T  22082447 cacacagttatacatg 22082432  T

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Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 40164756 - 40164544
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagttagatatgc 107  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||    
T  40164756 aggttgctttaagatccaaatgtgtcgtacatttttagttcaagcctaaagtttt-atgaagaatcctttcagaaaataatctaattgagttagatctgc 40164658  T
Q  108 tcaaatatcattataaagtatttcatgctatactatcaatnnnnnnnccaaagttgcaatgtaagctatctaaggctactccatattctaaatgattcaa 207  Q
    |||||||||||||||||| ||||||| |||||||||||||       |||||||||||||||| |||||||||||||| ||||| |||||||| |||||     
T  40164657 tcaaatatcattataaagcatttcatactatactatcaataaaaaaaccaaagttgcaatgtatgctatctaaggctattccatgttctaaattattca- 40164559  T
Q  208 cacacagttatacatg 223  Q
     |||||||||||||||    
T  40164558 -acacagttatacatg 40164544  T

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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 6921596 - 6921503
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcc--tttcagaaaataatataattgagtt 99  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||    
T  6921596 aggttgctttaagatccaaatgtgtcatacatttttggttcatgcctaaagattttatgaagaatcctttttcagaaaatgatataattgagtt 6921503  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 38238282 - 38238375
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcc--tttcagaaaataatataattgagtt 99  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||    
T  38238282 aggttgctttaagatccaaatgtgtcatacatttttggttcatgcctaaagattttatgaagaatcctttttcagaaaatgatataattgagtt 38238375  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 7827767 - 7827881
Alignment:
Q  10 gttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaataatataattgagttagatatgctc 109  Q
    ||||| ||||||| |||||||||  ||||||||| ||| | ||||||||||  ||| |||||||||||||||||||||||||| |||||||| | || ||    
T  7827767 gttgcattaagattcaaatgtgtaatacatttttggttaaggcctaaagttgatataaagaatcctttcagaaaataatataactgagttaggtctgttc 7827866  T
Q  110 aaatatcattataaa 124  Q
     ||||||||||||||    
T  7827867 gaatatcattataaa 7827881  T

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Target: scaffold0135 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 2055 - 1979
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  2055 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 1979  T

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Target: scaffold0135; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 6270 - 6194
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  6270 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 6194  T

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Target: scaffold0135; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 10485 - 10409
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  10485 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 10409  T

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Target: scaffold0135; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 14700 - 14624
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  14700 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 14624  T

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Target: scaffold0135; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 18915 - 18839
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  18915 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 18839  T

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Target: scaffold0135; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 23130 - 23054
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  23130 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 23054  T

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Target: scaffold0135; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 27345 - 27269
Alignment:
Q  8 aggttgctttaagatccaaatgtgtcgtacattttttgttcatgcctaaagtttttatgaagaatcctttcagaaaa 84  Q
    |||||||| |||||| ||||||  || || | |||| ||||||||||||||||| |||| |||||| ||||| ||||    
T  27345 aggttgctataagattcaaatgcatcatatagttttggttcatgcctaaagtttatatgtagaatcttttcaaaaaa 27269  T

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