View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_63 (Length: 224)
Name: NF1918_low_63
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 34986703 - 34986519
Alignment:
| Q |
17 |
atagaaatatataatgcaaattctggttgtgtctaaacctgtaaaagtgtagcatagtacaaacaaagcattgatacgaaaatgataccgtcaactcatt |
116 |
Q |
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| T |
34986703 |
atagaaatatataatgcaaattctggttgtgtctaaacctgtaaaagtgtagcatagtacaaa----gcattgatacgaaaatgataccgtcaactcact |
34986608 |
T |
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| Q |
117 |
agtacaataaaacaaaatcatagattaaaaccttcagcagagacttaaatctcatgctgattttacaaggacaaaaactatgtgtaact |
205 |
Q |
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| T |
34986607 |
agtacaataaaacaaaatcatagattaaaaccttcagcagagacttaaatctcatgctgattttacaaggacaaaaactatgtgtaact |
34986519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 34986434 - 34986390
Alignment:
| Q |
161 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaact |
205 |
Q |
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| T |
34986434 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgtaact |
34986390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 34993250 - 34993206
Alignment:
| Q |
161 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaact |
205 |
Q |
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| T |
34993250 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgcaact |
34993206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 34978229 - 34978170
Alignment:
| Q |
51 |
aaacctgtaaaagtgtagcatagtacaaacaaagcattgatacgaaaatgataccgtcaactca |
114 |
Q |
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| T |
34978229 |
aaacctgtaaaagtgtggtatagtacaaa----gcattgatacgaaaatgatgccgtcaactca |
34978170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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