View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1918_low_67 (Length: 209)
Name: NF1918_low_67
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 3067049 - 3067226
Alignment:
| Q |
14 |
aagaaaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaacatgatttaaattagta |
113 |
Q |
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| T |
3067049 |
aagagaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaacatgatttaaattagta |
3067148 |
T |
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| Q |
114 |
ccatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatt |
191 |
Q |
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| T |
3067149 |
ccatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatt |
3067226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 3069252 - 3069436
Alignment:
| Q |
14 |
aagaaaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaa-------catgatttaa |
106 |
Q |
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| T |
3069252 |
aagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacattcaacatgatttaa |
3069351 |
T |
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| Q |
107 |
attagtaccatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatt |
191 |
Q |
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| T |
3069352 |
attagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatt |
3069436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 3047699 - 3047811
Alignment:
| Q |
60 |
caccatctctaagctattgatctccaaatgttgtcaacatgatttaaattag--taccatttggggtaagcgaagcacaacttga--tcactcaatgtgc |
155 |
Q |
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| T |
3047699 |
caccatttctaagctattgatcttcacatgctgtcaacatgatttaaattagtataccattt-ggataactgaagaaaaacttgaccacactcaatgtga |
3047797 |
T |
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| Q |
156 |
ttgaagaaagtgaa |
169 |
Q |
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| T |
3047798 |
ttgaagaaagtgaa |
3047811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 32304853 - 32304911
Alignment:
| Q |
113 |
accatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagc |
171 |
Q |
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| T |
32304853 |
accatttgtggtaagtgaagcacaacttgaccactcaagatgattgaagaaattgaagc |
32304911 |
T |
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