View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1918_low_68 (Length: 209)
Name: NF1918_low_68
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1918_low_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 54889398 - 54889573
Alignment:
| Q |
15 |
caaaggtatgtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54889398 |
caaaggtatgtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaa |
54889497 |
T |
|
| Q |
115 |
ttacaaggtcaaacatatctcttttttccctcaacaattctagcgcttccacaggcttcgtagttgtagtaactgc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54889498 |
ttacaaggtcaaacatatctcttttttccctcaacaattctagcgcttccacaggtttcgtagttgtagtaactgc |
54889573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 54905447 - 54905622
Alignment:
| Q |
15 |
caaaggtatgtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaa |
114 |
Q |
| |
|
||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
54905447 |
caaaggtgtgtgagcttactgatgaaaggtaaatccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaa |
54905546 |
T |
|
| Q |
115 |
ttacaaggtcaaacatatctcttttttccctcaacaattctagcgcttccacaggcttcgtagttgtagtaactgc |
190 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54905547 |
ttactaggtcaaacatatccttcttttctctcaacaattctagcgcttccacaggtttcgtagttgtagtaactgc |
54905622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 54895023 - 54895196
Alignment:
| Q |
17 |
aaggtatgtgagcttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaatt |
116 |
Q |
| |
|
||||| ||| |||||||| ||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
54895023 |
aaggtttgttagcttactaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatcactaatt |
54895122 |
T |
|
| Q |
117 |
acaaggtcaaacatatctcttttttccctcaacaattctagcgcttccacaggcttcgtagttgtagtaactgc |
190 |
Q |
| |
|
| ||| |||||||| ||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
54895123 |
ataagatcaaacatgcttctcttttccctcaacaattcaagcgcttccactgacttcgtagttgtagtaactgc |
54895196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 49061166 - 49061287
Alignment:
| Q |
29 |
cttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcatgcttacatcactaattacaaggtcaaac |
128 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||||||| || | ||||| ||||| ||||||||||| || |||||| ||||||||| ||||| ||||||||| |
|
|
| T |
49061166 |
cttacttatgacgggaaggtccatttcaagtcccacaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccaggtcaaac |
49061265 |
T |
|
| Q |
129 |
atatctcttttttccctcaaca |
150 |
Q |
| |
|
| ||| | ||||| ||||||| |
|
|
| T |
49061266 |
ttgtctttgttttctctcaaca |
49061287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 2904734 - 2904663
Alignment:
| Q |
29 |
cttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcat |
100 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
2904734 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat |
2904663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 2893226 - 2893155
Alignment:
| Q |
29 |
cttactgatgaagggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcat |
100 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| ||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
2893226 |
cttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcat |
2893155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 48870461 - 48870519
Alignment:
| Q |
42 |
ggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcat |
100 |
Q |
| |
|
|||||||| || ||||||||||| ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
48870461 |
ggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat |
48870519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University