View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_low_7 (Length: 498)

Name: NF1918_low_7
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_low_7
NF1918_low_7
[»] chr3 (2 HSPs)
chr3 (230-480)||(36745622-36745872)
chr3 (1-107)||(36745517-36745623)
[»] chr8 (13 HSPs)
chr8 (224-375)||(6273640-6273791)
chr8 (263-354)||(6449899-6449990)
chr8 (260-354)||(6456366-6456460)
chr8 (224-368)||(6330988-6331132)
chr8 (220-375)||(6320519-6320674)
chr8 (35-109)||(6450315-6450389)
chr8 (229-375)||(6287891-6288037)
chr8 (1-109)||(6456577-6456685)
chr8 (51-109)||(6262699-6262757)
chr8 (298-375)||(6390068-6390145)
chr8 (304-342)||(6409353-6409391)
chr8 (290-351)||(6262455-6262516)
chr8 (52-109)||(6409689-6409746)
[»] chr5 (2 HSPs)
chr5 (287-355)||(9606050-9606118)
chr5 (32-109)||(9605756-9605833)
[»] chr1 (1 HSPs)
chr1 (279-327)||(47127110-47127158)
[»] chr2 (3 HSPs)
chr2 (31-109)||(42689192-42689270)
chr2 (264-322)||(42689380-42689438)
chr2 (290-354)||(42692378-42692442)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 230 - 480
Target Start/End: Original strand, 36745622 - 36745872
Alignment:
Q  230 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745622 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 36745721  T
Q  330 ttaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtggccattcaaagagatgctgagctccaagagttttggaaagaagtcgtaga 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745722 ttaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtggccattcaaagagatgctgagctccaagagttttggaaagaagtcgtaga 36745821  T
Q  430 gatcggtcatggtgatcataaaaataagccttggtggcctgagatgaattc 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745822 gatcggtcatggtgatcataaaaataagccttggtggcctgagatgaattc 36745872  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36745517 - 36745623
Alignment:
Q  1 atagagcaagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745517 atagagcaagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatctta 36745616  T
Q  101 tcaagag 107  Q
    |||||||    
T  36745617 tcaagag 36745623  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 375
Target Start/End: Complemental strand, 6273791 - 6273640
Alignment:
Q  224 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 323  Q
    |||| ||||||| |||||||| ||||| | ||| | || ||||| ||||||||  ||||| | |||||||||| ||||| ||||||||||||||||||||    
T  6273791 ttatctagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagaggactacccttatgctgctgatggattagagatatggg 6273692  T
Q  324 atgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 375  Q
     || ||||||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6273691 ctgttattaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6273640  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 6449990 - 6449899
Alignment:
Q  263 cacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 354  Q
    ||||| ||||| || |||||| | |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6449990 cacggccttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggtccaagactatgt 6449899  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 6456460 - 6456366
Alignment:
Q  260 ccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 354  Q
    ||||| |||||||| || | | || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6456460 ccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggttcaagactatgt 6456366  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 368
Target Start/End: Complemental strand, 6331132 - 6330988
Alignment:
Q  224 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 323  Q
    |||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||||||    
T  6331132 ttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatggg 6331033  T
Q  324 atgctattaaggcatgggtgaaagactatgttagtttgtactaca 368  Q
    ||||||| ||| |||||||  |||| ||||| ||||| |||||||    
T  6331032 atgctatcaagtcatgggttgaagaatatgtgagtttctactaca 6330988  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 220 - 375
Target Start/End: Complemental strand, 6320674 - 6320519
Alignment:
Q  220 tgctttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagata 319  Q
    |||| ||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||    
T  6320674 tgctatatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagata 6320575  T
Q  320 tgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 375  Q
    ||||||||||| ||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6320574 tgggatgctatcaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6320519  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 6450389 - 6450315
Alignment:
Q  35 ttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 109  Q
    ||||||| || ||||||||||||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  6450389 ttgagatttcttctgcagtttacaagaattgggttttcactgatcaagcattaccagctgatcttatcaagaggt 6450315  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 375
Target Start/End: Complemental strand, 6288037 - 6287891
Alignment:
Q  229 tagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgct 328  Q
    ||||||| |||||||| ||||| | | | | || ||||| ||||||||  |||||||||| ||||||| ||||| |||||||||||||||||||   ||     
T  6288037 tagaggagtggctgttgaggatccaacttccccacacggccttcgccttctgataaaagattacccttatgctgctgatggattagagatatggacagca 6287938  T
Q  329 attaaggcatgggtgaaagactatgttagtttgtactacaagacaga 375  Q
    |||||| |||||||  |||| |||||   ||| ||||||||| ||||    
T  6287937 attaagtcatgggttgaagaatatgtgtatttctactacaagtcaga 6287891  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6456685 - 6456577
Alignment:
Q  1 atagagcaagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatctta 100  Q
    ||||||||| ||||||||||||||||  |  | || ||||| || ||   |||||||| ||||||||||||  | ||||||||| |||| ||||||||||    
T  6456685 atagagcaaacatttttgccaggaccaaattcagtcgagatttcttcaatagtttacagggattgggttttcaccgaccaagcattaccggctgatctta 6456586  T
Q  101 tcaagaggt 109  Q
    |||||||||    
T  6456585 tcaagaggt 6456577  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 6262757 - 6262699
Alignment:
Q  51 agtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 109  Q
    |||||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||||    
T  6262757 agtttataaggattgggtttttacagaccaagccctccctgctgatcttatcaaaaggt 6262699  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 6390145 - 6390068
Alignment:
Q  298 tgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 375  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||  | || ||||| | ||| ||||||||| ||||    
T  6390145 tgctgttgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtcaatttctactacaagtcaga 6390068  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 6409391 - 6409353
Alignment:
Q  304 tgatggattagagatatgggatgctattaaggcatgggt 342  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  6409391 tgatggattagagatatgggctgctattaagtcatgggt 6409353  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 6262516 - 6262455
Alignment:
Q  290 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagacta 351  Q
    ||||||| ||||||||||||| | || || ||||||||||||||| |||||||  |||||||    
T  6262516 tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagacta 6262455  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 6409746 - 6409689
Alignment:
Q  52 gtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 109  Q
    |||||||||||||||||||| || || ||||||||||||  |||||| ||||| ||||    
T  6409746 gtttacaaggattgggttttcccggatcaagcactacctaatgatctaatcaaaaggt 6409689  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 9606050 - 9606118
Alignment:
Q  287 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgtt 355  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||  |||||||||||    
T  9606050 gactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagactatgtt 9606118  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 9605756 - 9605833
Alignment:
Q  32 ctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 109  Q
    ||||||||||||| || ||||  |||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  9605756 ctgttgagatgtcatcagcagcatacaagaattgggttttcactgatcaagcattaccggctgatcttatcaagaggt 9605833  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 47127158 - 47127110
Alignment:
Q  279 tgataaaagactacccttttgctgttgatggattagagatatgggatgc 327  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||    
T  47127158 tgatagaagactacccttttgctgttgatggattggaaatatgggatgc 47127110  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 42689192 - 42689270
Alignment:
Q  31 gctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 109  Q
    ||||| || ||||| || || ||||||||| |||||||||| ||||| ||||| || || |||||||||||||||||||    
T  42689192 gctgtggaaatgtcttcagcggtttacaagaattgggttttccctgatcaagcccttccagctgatcttatcaagaggt 42689270  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 42689380 - 42689438
Alignment:
Q  264 acggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgg 322  Q
    |||||||||| ||  ||||| | |||||||||| |||||||||||||||||||||||||    
T  42689380 acggacttcgtcttctgatagaggactacccttatgctgttgatggattagagatatgg 42689438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 42692442 - 42692378
Alignment:
Q  290 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 354  Q
    ||||||| ||||  |||||||||||||||||||| ||| || ||| |||||||  ||||||||||    
T  42692442 tacccttatgctcatgatggattagagatatgggctgcaataaagacatgggttcaagactatgt 42692378  T

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