View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1918_low_8 (Length: 494)

Name: NF1918_low_8
Description: NF1918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1918_low_8
NF1918_low_8
[»] chr1 (3 HSPs)
chr1 (225-318)||(3401160-3401253)
chr1 (18-82)||(3400861-3400925)
chr1 (149-231)||(3400992-3401066)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 3401160 - 3401253
Alignment:
Q  225 tgacaaatatagtaaacaaggtacctaaattaagaaattaagtgaacggcaaatagatcatgcatattctctattgtttataatcagtaagaaa 318  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  3401160 tgacaaatgtagtaaacaaggtacctaaattaagaaattaagtgaatggaaaatagatcatgcatattctctattgtttataatcagtaagaaa 3401253  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 3400861 - 3400925
Alignment:
Q  18 atgtccacgtgtcccaataaaaaataacattatgtgccaaaattgacagataattagatttttat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3400861 atgtccacgtgtcccaataaaaaataacattatgtgccaaaattgacaaataattagatttttat 3400925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 3400992 - 3401066
Alignment:
Q  149 gtcgaatggctattgatatcaaataacaccatctaaaaaactaaaatactaatatccaaaccacaatgggtgttgatgacaaa 231  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||| |||||    
T  3400992 gtcgaatggctattgatatcaaataacaccat--------ctaaaatactaatatccaaaccacaatggatgttgattacaaa 3401066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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