View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19190_high_1 (Length: 697)

Name: NF19190_high_1
Description: NF19190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19190_high_1
NF19190_high_1
[»] chr6 (12 HSPs)
chr6 (273-697)||(504883-505309)
chr6 (187-251)||(505372-505436)
chr6 (572-627)||(504613-504668)
chr6 (660-694)||(13661556-13661590)
chr6 (663-697)||(33549143-33549177)
chr6 (663-694)||(31622997-31623028)
chr6 (659-697)||(14199950-14199988)
chr6 (663-697)||(23910114-23910148)
chr6 (663-697)||(30127439-30127473)
chr6 (664-697)||(19162823-19162856)
chr6 (560-592)||(7736972-7737004)
chr6 (665-697)||(10338177-10338209)
[»] chr4 (21 HSPs)
chr4 (503-624)||(48297905-48298023)
chr4 (257-394)||(48297549-48297683)
chr4 (634-697)||(47044720-47044790)
chr4 (659-697)||(19238580-19238618)
chr4 (663-697)||(39509109-39509143)
chr4 (659-697)||(49576897-49576935)
chr4 (665-697)||(30938222-30938254)
chr4 (659-694)||(51954149-51954184)
chr4 (659-697)||(8030207-8030245)
chr4 (659-697)||(9936964-9937002)
chr4 (659-697)||(13015462-13015500)
chr4 (663-697)||(23377995-23378029)
chr4 (659-697)||(31759661-31759699)
chr4 (663-697)||(37109354-37109388)
chr4 (663-697)||(38869807-38869841)
chr4 (663-696)||(17618320-17618353)
chr4 (663-696)||(24827864-24827897)
chr4 (665-697)||(7949457-7949489)
chr4 (669-697)||(19229211-19229239)
chr4 (665-697)||(46295138-46295170)
chr4 (665-697)||(51622526-51622558)
[»] chr1 (15 HSPs)
chr1 (503-627)||(12576103-12576224)
chr1 (312-494)||(38191348-38191522)
chr1 (275-396)||(12576683-12576801)
chr1 (653-697)||(38947475-38947519)
chr1 (659-697)||(6122829-6122867)
chr1 (660-697)||(3265960-3265997)
chr1 (666-697)||(12587312-12587343)
chr1 (662-697)||(16893432-16893467)
chr1 (663-697)||(2799901-2799935)
chr1 (663-697)||(15786323-15786357)
chr1 (659-697)||(24047105-24047143)
chr1 (663-697)||(33700776-33700810)
chr1 (635-697)||(48383968-48384030)
chr1 (663-695)||(40257438-40257470)
chr1 (659-695)||(52116786-52116822)
[»] chr2 (23 HSPs)
chr2 (256-350)||(19999024-19999118)
chr2 (545-632)||(20027944-20028030)
chr2 (567-633)||(20017703-20017768)
chr2 (663-697)||(39715031-39715065)
chr2 (660-697)||(21195679-21195716)
chr2 (658-697)||(17737627-17737666)
chr2 (659-690)||(19016066-19016097)
chr2 (258-379)||(20017328-20017445)
chr2 (659-697)||(7799038-7799076)
chr2 (659-697)||(13803530-13803568)
chr2 (659-697)||(21939126-21939164)
chr2 (659-697)||(23052526-23052564)
chr2 (663-697)||(28846730-28846764)
chr2 (663-697)||(29503310-29503344)
chr2 (659-697)||(32687516-32687554)
chr2 (659-697)||(33569861-33569899)
chr2 (663-697)||(42327398-42327432)
chr2 (663-697)||(42860387-42860421)
chr2 (545-582)||(12307473-12307510)
chr2 (663-696)||(25637190-25637223)
chr2 (634-697)||(24144679-24144747)
chr2 (659-695)||(30907633-30907669)
chr2 (663-695)||(33839265-33839297)
[»] chr7 (14 HSPs)
chr7 (659-697)||(20335834-20335872)
chr7 (666-697)||(45709711-45709742)
chr7 (659-697)||(2446343-2446381)
chr7 (663-697)||(22760902-22760936)
chr7 (663-697)||(25590650-25590684)
chr7 (663-697)||(26459413-26459447)
chr7 (659-697)||(43590942-43590980)
chr7 (663-697)||(48771977-48772011)
chr7 (664-697)||(7309396-7309429)
chr7 (662-694)||(18363734-18363766)
chr7 (663-695)||(26703164-26703196)
chr7 (659-695)||(27776207-27776243)
chr7 (665-697)||(31835233-31835265)
chr7 (665-697)||(43215225-43215257)
[»] chr8 (13 HSPs)
chr8 (634-697)||(29858052-29858122)
chr8 (663-697)||(968401-968435)
chr8 (659-697)||(11819811-11819849)
chr8 (663-697)||(16852379-16852413)
chr8 (659-697)||(27750765-27750803)
chr8 (662-697)||(35641904-35641939)
chr8 (659-694)||(44780120-44780155)
chr8 (667-697)||(11928734-11928764)
chr8 (659-697)||(29431046-29431084)
chr8 (659-697)||(33727876-33727914)
chr8 (659-697)||(35583634-35583672)
chr8 (663-695)||(23361654-23361686)
chr8 (636-695)||(28540433-28540493)
[»] scaffold0299 (1 HSPs)
scaffold0299 (663-697)||(11567-11601)
[»] scaffold0258 (1 HSPs)
scaffold0258 (663-697)||(15326-15360)
[»] chr5 (12 HSPs)
chr5 (663-697)||(16773846-16773880)
chr5 (660-697)||(25627093-25627130)
chr5 (659-695)||(9842851-9842887)
chr5 (663-694)||(4793094-4793125)
chr5 (659-694)||(17028270-17028305)
chr5 (658-697)||(30109311-30109350)
chr5 (663-697)||(14285200-14285234)
chr5 (663-697)||(43442235-43442269)
chr5 (660-697)||(29173526-29173563)
chr5 (663-691)||(1410668-1410696)
chr5 (665-697)||(8779313-8779345)
chr5 (663-691)||(14495814-14495842)
[»] chr3 (25 HSPs)
chr3 (663-697)||(10445142-10445176)
chr3 (663-697)||(44743858-44743892)
chr3 (634-697)||(37788468-37788538)
chr3 (665-697)||(47454620-47454652)
chr3 (651-695)||(49452900-49452944)
chr3 (663-697)||(2667901-2667935)
chr3 (663-697)||(4844514-4844548)
chr3 (663-697)||(4870210-4870244)
chr3 (659-697)||(8075130-8075168)
chr3 (545-583)||(8791032-8791070)
chr3 (660-694)||(27093367-27093401)
chr3 (663-697)||(30311345-30311379)
chr3 (663-697)||(33899653-33899687)
chr3 (663-697)||(36720420-36720454)
chr3 (663-697)||(45229273-45229307)
chr3 (659-697)||(45308905-45308943)
chr3 (663-697)||(51903881-51903915)
chr3 (663-697)||(52769986-52770020)
chr3 (660-697)||(8170708-8170745)
chr3 (665-697)||(2597223-2597255)
chr3 (665-697)||(14186688-14186720)
chr3 (663-691)||(31608533-31608561)
chr3 (661-697)||(49397544-49397580)
chr3 (662-694)||(49494152-49494184)
chr3 (663-695)||(53412984-53413016)
[»] scaffold0291 (1 HSPs)
scaffold0291 (663-697)||(2473-2507)
[»] scaffold0194 (1 HSPs)
scaffold0194 (663-697)||(13049-13083)
[»] scaffold0126 (1 HSPs)
scaffold0126 (659-697)||(25350-25388)
[»] scaffold0002 (1 HSPs)
scaffold0002 (663-695)||(94976-95008)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 273 - 697
Target Start/End: Complemental strand, 505309 - 504883
Alignment:
Q  273 agtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaaccttaatggaaaagag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505309 agtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaaccttaatggaaaagag 505210  T
Q  373 agcattgtgaaacacaatacaataatcataaattcgttattaacttctttataaagtaacgtcaaaa-gttttgaataaatagtaattttcatctaagaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  505209 agcattgtgaaacacaatacaataatcataaattcgttattaacttctttataaagtaacgtcaaaaagctttgaataaatagtaattttcatctaagaa 505110  T
Q  472 attgagcttggctaccttcatgtatatcactattgtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaat 571  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505109 attgagcttggctaccttcatgtatatcactatagtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaat 505010  T
Q  572 attttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaa-caagtaagtccacttggattggcccggtggtattgacttgggagtg 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||     
T  505009 attttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaataaagtaagtccacttggattggcccggtggtattgacttgggagta 504910  T
Q  671 tgctcctcctcgaggtctcaggttcga 697  Q
    | || ||||||||||||||||||||||    
T  504909 tactgctcctcgaggtctcaggttcga 504883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 505436 - 505372
Alignment:
Q  187 ctcaaatcacaccacccatcacttataaattggttttgcaaaaatgaattaaactaaacttaaaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  505436 ctcaaatcacaccacccatcacttataaattggttttgcaaaaatgaattaaactaaacttaaaa 505372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 627
Target Start/End: Complemental strand, 504668 - 504613
Alignment:
Q  572 attttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaacaa 627  Q
    |||||||||||||||||||  |||  ||||||||||||||||||||||||||||||    
T  504668 attttctcaaaccaaacaaacattcctagttgaatgaatgatataaaaatgaacaa 504613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 694
Target Start/End: Original strand, 13661556 - 13661590
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    |||||||||||||||||||||||||||||||||||    
T  13661556 acttgggagtgtgctcctcctcgaggtctcaggtt 13661590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 33549143 - 33549177
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  33549143 tgggagtgtgctcctcctcgaggtctcaggttcga 33549177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 694
Target Start/End: Complemental strand, 31623028 - 31622997
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    ||||||||||||||||||||||||||||||||    
T  31623028 tgggagtgtgctcctcctcgaggtctcaggtt 31622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 14199988 - 14199950
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  14199988 gacttgggagtgtgctcctcctcaaggtctcagattcga 14199950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 23910148 - 23910114
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  23910148 tgggagtgtgctcctcctcaaggtctcaggttcga 23910114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 30127439 - 30127473
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||| ||||||||||||||||||    
T  30127439 tgggagtgtgctcctcttcgaggtctcaggttcga 30127473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 664 - 697
Target Start/End: Original strand, 19162823 - 19162856
Alignment:
Q  664 gggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||| ||||||||||||    
T  19162823 gggagtgtgctcctcctcgagatctcaggttcga 19162856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 592
Target Start/End: Original strand, 7736972 - 7737004
Alignment:
Q  560 aaaatagaaaatattttctcaaaccaaacaagt 592  Q
    |||||||||||| ||||||||||||||||||||    
T  7736972 aaaatagaaaatgttttctcaaaccaaacaagt 7737004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 10338209 - 10338177
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  10338209 ggagtgtgctcctcctcaaggtctcaggttcga 10338177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 503 - 624
Target Start/End: Original strand, 48297905 - 48298023
Alignment:
Q  503 attgtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaatattttctcaaaccaaacaagtatttttagtt 602  Q
    ||||||||| || |||||||||||| ||||| |  |||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  48297905 attgtttcttatacaaatattagaa-aagaagat-gacaattttgtaataaaaagtgaaaatagaaaatattttcttaaaccaaacaagta-ctttagtt 48298001  T
Q  603 gaatgaatgatataaaaatgaa 624  Q
    ||||||||||||||||| ||||    
T  48298002 gaatgaatgatataaaattgaa 48298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 257 - 394
Target Start/End: Original strand, 48297549 - 48297683
Alignment:
Q  257 agtaggcttcatggccagtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaa 356  Q
    |||||||||||||  || |||||||||||||  || || |||||||  || ||| ||||||| ||||||||||| ||||||||||||||||||| | |||    
T  48297549 agtaggcttcatgaacaatagatctgcaattaattctggtccatactccttaattagctcttcctgttccaccaccaaatcacactcaaattagcagcaa 48297648  T
Q  357 ccttaatggaaaagagagcattgtgaaacacaatacaa 394  Q
     ||   ||||||||||||||||| ||||||||| ||||    
T  48297649 tct---tggaaaagagagcattgagaaacacaacacaa 48297683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 697
Target Start/End: Original strand, 47044720 - 47044790
Alignment:
Q  634 ccacttggattggcccggtggtattgacttgg-------gagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||| ||||||||||||||||       |||| |||||||||||||||||||||||||||    
T  47044720 ccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcga 47044790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 19238618 - 19238580
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  19238618 gacttgggagtgtgctcctcctcgaggtctcgggttcga 19238580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 39509109 - 39509143
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  39509109 tgggagtgtgctcctcctcgaggtctcaggttcga 39509143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 49576935 - 49576897
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  49576935 gacttgggagtgtgctcctcctcaaggtctcaggttcga 49576897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 30938254 - 30938222
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||    
T  30938254 ggagtgtgctcctcctcgaggtctcaggttcga 30938222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 694
Target Start/End: Original strand, 51954149 - 51954184
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51954149 gacttgggagtatgctcctcctcgaggtctcaggtt 51954184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 8030245 - 8030207
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  8030245 gacttgggagtgtgctcctcctcaaggtctcaagttcga 8030207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 9937002 - 9936964
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  9937002 gacttgggagtgtgctcctcctcgaagtttcaggttcga 9936964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 13015462 - 13015500
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  13015462 gacttgggagtgtgctcctcctcgaagtctcatgttcga 13015500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 23377995 - 23378029
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  23377995 tgggagtgtgctcctcctcaaggtctcaggttcga 23378029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 31759699 - 31759661
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  31759699 gacttgggagtgtgctcctcctcaaggtctcagattcga 31759661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 37109388 - 37109354
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  37109388 tgggagtgtgctcctcctcaaggtctcaggttcga 37109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 38869807 - 38869841
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  38869807 tgggagtgtgctcctcctcaaggtctcaggttcga 38869841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 663 - 696
Target Start/End: Original strand, 17618320 - 17618353
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcg 696  Q
    |||||||||||||||||||||||||||| |||||    
T  17618320 tgggagtgtgctcctcctcgaggtctcatgttcg 17618353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 663 - 696
Target Start/End: Original strand, 24827864 - 24827897
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcg 696  Q
    |||||||| |||||||||||||||||||||||||    
T  24827864 tgggagtgcgctcctcctcgaggtctcaggttcg 24827897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 7949489 - 7949457
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  7949489 ggagtgtgctcctcctcaaggtctcaggttcga 7949457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 669 - 697
Target Start/End: Complemental strand, 19229239 - 19229211
Alignment:
Q  669 tgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||    
T  19229239 tgtgctcctcctcgaggtctcaggttcga 19229211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Original strand, 46295138 - 46295170
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  46295138 ggagtgtgctcctcctcaaggtctcaggttcga 46295170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Original strand, 51622526 - 51622558
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  51622526 ggagtgtgctcctcctcaaggtctcaggttcga 51622558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 627
Target Start/End: Complemental strand, 12576224 - 12576103
Alignment:
Q  503 attgtttctcatgcaaatattagaagaagaaaaaagacattattgtaattaaaagtgaaaatagaaaatattttctcaaaccaaacaagtatttttagtt 602  Q
    ||||||||||||||||||||||||| |   || | | |||| || |||| ||||| ||||| ||||||||||||||||| | |||||||||| || ||||    
T  12576224 attgtttctcatgcaaatattagaaaac--aagatggcatttttctaatgaaaagcgaaaacagaaaatattttctcaaccaaaacaagtatctt-agtt 12576128  T
Q  603 gaatgaatgatataaaaatgaacaa 627  Q
    ||||||||||||||||| |||||||    
T  12576127 gaatgaatgatataaaactgaacaa 12576103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 312 - 494
Target Start/End: Original strand, 38191348 - 38191522
Alignment:
Q  312 agctctttctgttccac--caacaaatcacactcaaattagtaccaaccttaatggaaaagagagcattgtgaaacacaatacaataatcataaattcgt 409  Q
    ||||||| |||||||||  || |||||||||||||| |||||| |||||||   |||||||| ||||||| ||||||| ||||||||||||||           
T  38191348 agctcttcctgttccacaccaccaaatcacactcaatttagtagcaacctt---ggaaaagaaagcattgagaaacacgatacaataatcata------- 38191437  T
Q  410 tattaacttctttataaagtaacgtcaaaagttttgaataaat-agtaattttcatctaagaaattgagcttggctaccttcatgt 494  Q
     ||||||||||||| |||  ||| |||| || ||||||||| | | ||||| |||||||||||| ||| ||||| |||||||||||    
T  38191438 -attaacttctttacaaaccaacatcaagagctttgaataagtaaataattgtcatctaagaaaatgaacttggttaccttcatgt 38191522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 396
Target Start/End: Complemental strand, 12576801 - 12576683
Alignment:
Q  275 tagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaaccttaatggaaaagagag 374  Q
    |||||||||||||| || || ||||||| ||| ||  ||||||| |||||| |||| ||||||||||||||||||||| |||   || | ||||| ||||    
T  12576801 tagatctgcaattgattctggtccatacttcttaactagctcttcctgttctaccaccaaatcacactcaaattagtagcaa---tatttgaaaatagag 12576705  T
Q  375 cattgtgaaacacaatacaata 396  Q
    ||||| ||| ||||||||||||    
T  12576704 cattgagaaccacaatacaata 12576683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 697
Target Start/End: Complemental strand, 38947519 - 38947475
Alignment:
Q  653 ggtattgacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  38947519 ggtattgacttgggagtgtgctcctcctcaaggtctcaggttcga 38947475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 6122829 - 6122867
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  6122829 gacttgggagtgtgctcctcctcaaggtctcaggttcga 6122867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 3265960 - 3265997
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3265960 acttgggagtgtgctcctcctcaaggtctcaggttcga 3265997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 697
Target Start/End: Original strand, 12587312 - 12587343
Alignment:
Q  666 gagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||||||||||    
T  12587312 gagtgtgctcctcctcgaggtctcaggttcga 12587343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 697
Target Start/End: Original strand, 16893432 - 16893467
Alignment:
Q  662 ttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||| |||||||||||||||||||||||||    
T  16893432 ttgggagtgtactcctcctcgaggtctcaggttcga 16893467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 2799901 - 2799935
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  2799901 tgggagtgtgctcctcctcaaggtctcaggttcga 2799935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 15786357 - 15786323
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  15786357 tgggagtgtgctcctcctcaaggtctcaggttcga 15786323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 24047143 - 24047105
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  24047143 gacttgggagtgtgctcctcctcgaggtttcaagttcga 24047105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 33700810 - 33700776
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  33700810 tgggagtgtgctcctcctcaaggtctcaggttcga 33700776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 697
Target Start/End: Complemental strand, 48384030 - 48383968
Alignment:
Q  635 cacttggattggcccggtggtattgacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||| ||||  ||||||||||| |||||||  |||||| || ||||||||||||||||||    
T  48384030 cacttgggttggttcggtggtattgccttgggaacgtgctcttcatcgaggtctcaggttcga 48383968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 695
Target Start/End: Original strand, 40257438 - 40257470
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    |||||||||||||||||||||||||||| ||||    
T  40257438 tgggagtgtgctcctcctcgaggtctcaagttc 40257470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 659 - 695
Target Start/End: Complemental strand, 52116822 - 52116786
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||||||| | |||||||||||    
T  52116822 gacttgggagtgtgctcctcctcaatgtctcaggttc 52116786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 19999024 - 19999118
Alignment:
Q  256 aagtaggcttcatggccagtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattag 350  Q
    ||||||||||||||  || |||||||||||||| || || |||| |||||  ||  ||||||| |||||||||||||||||||||||||||||||    
T  19999024 aagtaggcttcatgtgcaatagatctgcaattgattctggtccaaacatcctaactagctcttcctgttccaccaacaaatcacactcaaattag 19999118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 545 - 632
Target Start/End: Original strand, 20027944 - 20028030
Alignment:
Q  545 ttgtaattaaaagtgaaaatagaaaatattttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaacaagtaag 632  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||| || | |||||| ||||||||||||| || ||||||| ||||    
T  20027944 ttgtaattaatagtgaaaacagaaaatattttctcaaatcaaacaatta-tcttagtttaatgaatgatatataattgaacaaataag 20028030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 633
Target Start/End: Original strand, 20017703 - 20017768
Alignment:
Q  567 aaaatattttctcaaaccaaacaagtatttttagttgaatgaatgatataaaaatgaacaagtaagt 633  Q
    |||||||||||||||| |||||||||| | ||| || |||||||||||||||| ||||||| |||||    
T  20017703 aaaatattttctcaaatcaaacaagta-tcttaatttaatgaatgatataaaattgaacaaataagt 20017768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 39715031 - 39715065
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  39715031 tgggagtgtgctcctcctcgaggtctcaggttcga 39715065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 21195716 - 21195679
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21195716 acttgggagtgtgctcctcctcaaggtctcaggttcga 21195679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 697
Target Start/End: Complemental strand, 17737666 - 17737627
Alignment:
Q  658 tgacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  17737666 tgacttgggagtgtgctcctcctcaaggtctcatgttcga 17737627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 690
Target Start/End: Original strand, 19016066 - 19016097
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctca 690  Q
    ||||||||||||||||||||||||||||||||    
T  19016066 gacttgggagtgtgctcctcctcgaggtctca 19016097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 379
Target Start/End: Original strand, 20017328 - 20017445
Alignment:
Q  258 gtaggcttcatggccagtagatctgcaattgcttttgctccatacatctcaatcagctctttctgttccaccaacaaatcacactcaaattagtaccaac 357  Q
    ||||||||||||  ||  ||||||||||||| || || ||||||||||  ||  ||||||| |||| ||||||  |||||||||||||||||||| |||     
T  20017328 gtaggcttcatgtgcaagagatctgcaattgattctggtccatacatcctaactagctcttcctgt-ccaccacaaaatcacactcaaattagtagcaa- 20017425  T
Q  358 cttaatggaaaagagagcattg 379  Q
      || ||||||| |||||||||    
T  20017426 --tattggaaaatagagcattg 20017445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 7799076 - 7799038
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  7799076 gacttgggagtgtgctcctcctcgagatctcagattcga 7799038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 13803530 - 13803568
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  13803530 gacttaggagtgtgctcctcctcaaggtctcaggttcga 13803568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 21939164 - 21939126
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  21939164 gacttgagagtgtgctcctcctcgagatctcaggttcga 21939126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 23052564 - 23052526
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  23052564 gacttgggagtgtgcttctcctcaaggtctcaggttcga 23052526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 28846730 - 28846764
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||| |||||||||||||    
T  28846730 tgggagtgtgctcctcctcgatgtctcaggttcga 28846764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 29503310 - 29503344
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  29503310 tgggagtgtgctcctcctcaaggtctcaggttcga 29503344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 32687516 - 32687554
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  32687516 gacttgagagtgtgttcctcctcgaggtctcaggttcga 32687554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 33569899 - 33569861
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  33569899 gacttggaagtgtgctcttcctcgaggtctcaggttcga 33569861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 42327432 - 42327398
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  42327432 tgggagtgtgctcctcctcaaggtctcaggttcga 42327398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 42860387 - 42860421
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||| ||||||    
T  42860387 tgggagtgtgctcctcctcgaggtctcaagttcga 42860421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 582
Target Start/End: Original strand, 12307473 - 12307510
Alignment:
Q  545 ttgtaattaaaagtgaaaatagaaaatattttctcaaa 582  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  12307473 ttgtaataaaaagtgaaaatagaaaataatttctcaaa 12307510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 663 - 696
Target Start/End: Original strand, 25637190 - 25637223
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcg 696  Q
    ||||||||||||||| ||||||||||||||||||    
T  25637190 tgggagtgtgctccttctcgaggtctcaggttcg 25637223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 634 - 697
Target Start/End: Original strand, 24144679 - 24144747
Alignment:
Q  634 ccacttggattggcccggtggtattgacttgg-----gagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||| | ||||||||||||||     |||||| |||||| ||||| ||||||||||||    
T  24144679 ccacttggattggcctgatggtattgacttgggacctgagtgtactcctcttcgagatctcaggttcga 24144747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 659 - 695
Target Start/End: Complemental strand, 30907669 - 30907633
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  30907669 gacttgggagtgtgctcctcctcgacgtctcatgttc 30907633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 695
Target Start/End: Complemental strand, 33839297 - 33839265
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||| |||||||||||||    
T  33839297 tgggagtgtgctcctcctcaaggtctcaggttc 33839265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 20335872 - 20335834
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20335872 gacttgggagtgtgctcctcctcgaggtctcaggttcga 20335834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 697
Target Start/End: Complemental strand, 45709742 - 45709711
Alignment:
Q  666 gagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||||||||||    
T  45709742 gagtgtgctcctcctcgaggtctcaggttcga 45709711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 2446343 - 2446381
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  2446343 gacttgggagtgtgctcctcctcgagatctcaagttcga 2446381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 22760902 - 22760936
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  22760902 tgggagtgtgctcctcctcaaggtctcaggttcga 22760936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 25590650 - 25590684
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||||| |||||||    
T  25590650 tgggagtgtgctcctcctcgaggtctcgggttcga 25590684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 26459447 - 26459413
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  26459447 tgggagtgtgctcctcctcaaggtctcaggttcga 26459413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 43590942 - 43590980
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  43590942 gacttgggagtgtgctcctcctcaatgtctcaggttcga 43590980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 48771977 - 48772011
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||| ||||||||||||||||    
T  48771977 tgggagtgtgctcctccttgaggtctcaggttcga 48772011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 664 - 697
Target Start/End: Original strand, 7309396 - 7309429
Alignment:
Q  664 gggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||||||| ||||||    
T  7309396 gggagtgtgctcctcctcgaggtctcaagttcga 7309429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 662 - 694
Target Start/End: Original strand, 18363734 - 18363766
Alignment:
Q  662 ttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    |||||||||||||||||||| ||||||||||||    
T  18363734 ttgggagtgtgctcctcctcaaggtctcaggtt 18363766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 695
Target Start/End: Original strand, 26703164 - 26703196
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||| |||||||||||||||||    
T  26703164 tgggagtgtgctccttctcgaggtctcaggttc 26703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 659 - 695
Target Start/End: Original strand, 27776207 - 27776243
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    |||||| |||||||||||||||||| |||||||||||    
T  27776207 gacttgagagtgtgctcctcctcgaagtctcaggttc 27776243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Original strand, 31835233 - 31835265
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  31835233 ggagtgtgctcctcctcaaggtctcaggttcga 31835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Original strand, 43215225 - 43215257
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  43215225 ggagtgtgctcctcctcaaggtctcaggttcga 43215257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 697
Target Start/End: Complemental strand, 29858122 - 29858052
Alignment:
Q  634 ccacttggattggcccggtggtattgacttggga-------gtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||| |||||||||| |||||||       ||||||||||||||||||||||||||||||    
T  29858122 ccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcga 29858052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 968401 - 968435
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  968401 tgggagtgtgctcctcctcgaggtctcaggttcga 968435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 11819811 - 11819849
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  11819811 gacttgggagtgtgctcctcctcaaggtctcaggttcga 11819849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 16852379 - 16852413
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  16852379 tgggagtgtgctcctcctcgaggtctcaggttcga 16852413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 27750765 - 27750803
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  27750765 gacttgggagtgtgctcctcctcaaggtctcaggttcga 27750803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 697
Target Start/End: Complemental strand, 35641939 - 35641904
Alignment:
Q  662 ttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||| |||||||||||||    
T  35641939 ttgggagtgtgctcctcctcgatgtctcaggttcga 35641904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 694
Target Start/End: Complemental strand, 44780155 - 44780120
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44780155 gacttgggagtgtgctcctcctcaaggtctcaggtt 44780120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 667 - 697
Target Start/End: Complemental strand, 11928764 - 11928734
Alignment:
Q  667 agtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||    
T  11928764 agtgtgctcctcctcgaggtctcaggttcga 11928734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 29431046 - 29431084
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  29431046 gacttgggagtgtgctcctccttgaggcctcaggttcga 29431084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 33727914 - 33727876
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  33727914 gacttggaagtgtgctcctcctcaaggtctcaggttcga 33727876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Original strand, 35583634 - 35583672
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  35583634 gacttgggagtttgctcctcctcgaggtctcaggatcga 35583672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 695
Target Start/End: Complemental strand, 23361686 - 23361654
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||| |||||||||||||    
T  23361686 tgggagtgtgctcctcctcaaggtctcaggttc 23361654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 636 - 695
Target Start/End: Original strand, 28540433 - 28540493
Alignment:
Q  636 acttggattggcccggtggtattg-acttgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||| |||||||| | || || |||||||||||| ||| |||||||||||||    
T  28540433 acttggattggcctggtggtatgggacatgagagtgtgctccttctctaggtctcaggttc 28540493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 11567 - 11601
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  11567 tgggagtgtgctcctcctcgaggtctcaggttcga 11601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 15360 - 15326
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  15360 tgggagtgtgctcctcctcgaggtctcaggttcga 15326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 16773846 - 16773880
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  16773846 tgggagtgtgctcctcctcgaggtctcaggttcga 16773880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 25627093 - 25627130
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25627093 acttgggagtgtgctcctcctcaaggtctcaggttcga 25627130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 695
Target Start/End: Complemental strand, 9842887 - 9842851
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9842887 gacttgggagtgtgctcctcctcgaggtctcgggttc 9842851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 694
Target Start/End: Complemental strand, 4793125 - 4793094
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    ||||||||||||||||||||||||||||||||    
T  4793125 tgggagtgtgctcctcctcgaggtctcaggtt 4793094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 694
Target Start/End: Complemental strand, 17028305 - 17028270
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17028305 gacttgggagtgtgctcctcctcaaggtctcaggtt 17028270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 697
Target Start/End: Complemental strand, 30109350 - 30109311
Alignment:
Q  658 tgacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  30109350 tgacctgggagtgtgctcctccttgaggtctcaggttcga 30109311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 14285200 - 14285234
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  14285200 tgggagtgtgctcctcctcaaggtctcaggttcga 14285234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 43442235 - 43442269
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  43442235 tgggagtgtgctcctcctcaaggtctcaggttcga 43442269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 29173526 - 29173563
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  29173526 acttaggagtgtgctcctcctcgaggtttcaggttcga 29173563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 691
Target Start/End: Complemental strand, 1410696 - 1410668
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcag 691  Q
    |||||||||||||||||||||||||||||    
T  1410696 tgggagtgtgctcctcctcgaggtctcag 1410668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 8779345 - 8779313
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||| ||||||||||    
T  8779345 ggagtgtgctcctcctcgaggtttcaggttcga 8779313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 691
Target Start/End: Complemental strand, 14495842 - 14495814
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcag 691  Q
    |||||||||||||||||||||||||||||    
T  14495842 tgggagtgtgctcctcctcgaggtctcag 14495814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 10445176 - 10445142
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  10445176 tgggagtgtgctcctcctcgaggtctcaggttcga 10445142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 44743892 - 44743858
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||||    
T  44743892 tgggagtgtgctcctcctcgaggtctcaggttcga 44743858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 697
Target Start/End: Complemental strand, 37788538 - 37788468
Alignment:
Q  634 ccacttggattggcccggtggtattgacttgg-------gagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||| ||||||| |||||||||||||||       |||||||||||||||| |||||||||||||||    
T  37788538 ccacttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcga 37788468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 47454652 - 47454620
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||||||    
T  47454652 ggagtgtgctcctcctcgaggtctcaggttcga 47454620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 49452900 - 49452944
Alignment:
Q  651 gtggtattgacttgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||| | ||||||||||||||||||||| |||||||||||||    
T  49452900 gtggtataggcttgggagtgtgctcctcctcaaggtctcaggttc 49452944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 2667901 - 2667935
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||| |||||||||||||||||||||    
T  2667901 tgggagtgtgctcttcctcgaggtctcaggttcga 2667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 4844548 - 4844514
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||| ||||    
T  4844548 tgggagtgtgctcctcctcgaggtctcaggatcga 4844514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 4870244 - 4870210
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||||||||| ||||    
T  4870244 tgggagtgtgctcctcctcgaggtctcaggatcga 4870210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 8075168 - 8075130
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  8075168 gacttgggagtgtgctcctcctcaaggtttcaggttcga 8075130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 583
Target Start/End: Original strand, 8791032 - 8791070
Alignment:
Q  545 ttgtaattaaaagtgaaaatagaaaatattttctcaaac 583  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  8791032 ttgtaattaaaagtgaaaagagaaaatattttttcaaac 8791070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 660 - 694
Target Start/End: Complemental strand, 27093401 - 27093367
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    |||||||||||||||||||||| ||||||||||||    
T  27093401 acttgggagtgtgctcctcctcaaggtctcaggtt 27093367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 30311345 - 30311379
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  30311345 tgggagtgtgctcctcctcaaggtctcaggttcga 30311379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 33899653 - 33899687
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  33899653 tgggagtgtgctcctcctctaggtctcaggttcga 33899687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 36720420 - 36720454
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||||||| ||||||||||    
T  36720420 tgggagtgtgctcctcctcgaggtttcaggttcga 36720454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Original strand, 45229273 - 45229307
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||| ||||||||||||||    
T  45229273 tgggagtgtgctcctcctcgtggtctcaggttcga 45229307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 45308943 - 45308905
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  45308943 gacttgtgagtatgctcctcctcgaggtctcaggttcga 45308905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 51903915 - 51903881
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||||| ||||||||||||||    
T  51903915 tgggagtgtgctcctcctcgtggtctcaggttcga 51903881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 52770020 - 52769986
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||| ||||||||||||||||    
T  52770020 tgggagtgtgctcctccttgaggtctcaggttcga 52769986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 8170708 - 8170745
Alignment:
Q  660 acttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  8170708 acttgggagtgtgctcctactcaaggtctcaggttcga 8170745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Complemental strand, 2597255 - 2597223
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||||| ||||||||||||||||    
T  2597255 ggagtgtgctcctccttgaggtctcaggttcga 2597223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 665 - 697
Target Start/End: Original strand, 14186688 - 14186720
Alignment:
Q  665 ggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||| |||||||||||||||    
T  14186688 ggagtgtgctcctcctcaaggtctcaggttcga 14186720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 691
Target Start/End: Complemental strand, 31608561 - 31608533
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcag 691  Q
    |||||||||||||||||||||||||||||    
T  31608561 tgggagtgtgctcctcctcgaggtctcag 31608533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 661 - 697
Target Start/End: Complemental strand, 49397580 - 49397544
Alignment:
Q  661 cttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  49397580 cttgggagtgtgcttctcctcgaggtctcatgttcga 49397544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 662 - 694
Target Start/End: Complemental strand, 49494184 - 49494152
Alignment:
Q  662 ttgggagtgtgctcctcctcgaggtctcaggtt 694  Q
    |||||||||||||| ||||||||||||||||||    
T  49494184 ttgggagtgtgctcttcctcgaggtctcaggtt 49494152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 695
Target Start/End: Original strand, 53412984 - 53413016
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||| |||||||||||||    
T  53412984 tgggagtgtgctcctcctcaaggtctcaggttc 53413016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 2507 - 2473
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  2507 tgggagtgtgctcctcctcaaggtctcaggttcga 2473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 13083 - 13049
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| |||||||||||||||    
T  13083 tgggagtgtgctcctcctcaaggtctcaggttcga 13049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 25388 - 25350
Alignment:
Q  659 gacttgggagtgtgctcctcctcgaggtctcaggttcga 697  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  25388 gacttgggagtgtgctccttctcaaggtctcaggttcga 25350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 663 - 695
Target Start/End: Complemental strand, 95008 - 94976
Alignment:
Q  663 tgggagtgtgctcctcctcgaggtctcaggttc 695  Q
    ||||||||||||||||||| |||||||||||||    
T  95008 tgggagtgtgctcctcctcaaggtctcaggttc 94976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University