View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19190_low_1 (Length: 820)
Name: NF19190_low_1
Description: NF19190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19190_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 14 - 594
Target Start/End: Complemental strand, 30892278 - 30891698
Alignment:
| Q |
14 |
caccagtaagaccaaggagttgaagcaagaaaggaaacaaagaagtgatgatcaaggtacatatccaatatgtaagtaaacaaattgaaatacatattcc |
113 |
Q |
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| T |
30892278 |
caccagtaagaccaaggagttgaagcaagaaaggaaacaaagaagtgatgatcaaggtacatatccaatatgtaagtaaacaaattgaaatacatattcc |
30892179 |
T |
|
| Q |
114 |
tcgaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttcatatgtcacaacacatattgctgtt |
213 |
Q |
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| T |
30892178 |
tcgaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttcatatgttacaacacatattgctgtt |
30892079 |
T |
|
| Q |
214 |
attgctgcattgaggattgaacttaggtgaaataagtctctgagtactagtatcatgagagaaagtatcagaattggaattgtgtagagcaatattgacc |
313 |
Q |
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| T |
30892078 |
attgctgcattgaggattgaacttaggtgaaataagtctttgagtactagtatcatgagagaaagtatcagaattggaattgtgtagagcattattgacc |
30891979 |
T |
|
| Q |
314 |
tgtgccataagaaataaacaatgtcatggtcattatacatatattctaatccctcgagtcggataggaccacaaagggtggtaaagttctccgtcaagag |
413 |
Q |
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| T |
30891978 |
tgtgccataagaaataaacaatgtcatggtcattatacatatattctaatccctcgagtcggataggaccacagagggtggtaaagttctccgtcaagag |
30891879 |
T |
|
| Q |
414 |
atatagactagtttgaattctgagaaattaaaagtatcaatttgatcttaaaaaatttaatgtcgcttaaaatagtcttgcatacagactaatatcctta |
513 |
Q |
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| T |
30891878 |
atatagactagtttgaattctgagaaatgaaaagtatcaatttgatcttaaaaaatttcatgtcgcttaaaatagtcttgcatacagactaatatcctta |
30891779 |
T |
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| Q |
514 |
aaaattcctagaagtgactaagaataaattgtacttttcatttctctacgatcaactaagtctcaatctatgaactaccga |
594 |
Q |
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| T |
30891778 |
aaaattcctagaagtgactaagaatgaatcgtacttttcatttctctacgatcaactaggtctcaatctatgaactaccga |
30891698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 578 - 820
Target Start/End: Complemental strand, 30891684 - 30891443
Alignment:
| Q |
578 |
aatctatgaactaccgacaatgatacggattccaaacacgacaatgacactaacatgtggtcattgtcagtaatttgagaaaatgtaagtgattgaatat |
677 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30891684 |
aatctatgaactaccgacaatgatacggattacaaagacgacaatgacactaacatgtggtcattgtcagtaatttgagaaaatgtaagcgattgaatat |
30891585 |
T |
|
| Q |
678 |
tttaactaaatgtgtcggtgttgtgtcgttttccgacactaatatgtgttggacaacaaacacgcctttaactaaatgtgtcggtgtcatgtcgttttct |
777 |
Q |
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| T |
30891584 |
tttaactaaatgtgtcggtgtcgtgtcgttttccgacactaatatgtgttggacaacaaacacgcc-ttaactaaatgtgtcggtgtcatgtcgttttct |
30891486 |
T |
|
| Q |
778 |
tgcaagaacaggtacagtactaaaaggaaattcaggctatgac |
820 |
Q |
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| T |
30891485 |
tgcaagaacaggtacagtactaaaaggaaattcaggctatgac |
30891443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 9950236 - 9950309
Alignment:
| Q |
115 |
cgaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttc |
188 |
Q |
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| T |
9950236 |
cgaacactggttgggaagatttctgcacatatgatgttgggaataacaccaagacccatgcagaagacgctttc |
9950309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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