View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19190_low_3 (Length: 611)
Name: NF19190_low_3
Description: NF19190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19190_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 111 - 586
Target Start/End: Original strand, 19172735 - 19173210
Alignment:
| Q |
111 |
cagaattgagttataactgtttttgtttgtgtgattcacacggttctgatcaatatatatgtata-aaatgaatgggaacaaagttggttataacagaaa |
209 |
Q |
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| T |
19172735 |
cagaattgagtgataactgtttttgtttgtgtgattcacacggttctgatcaatatatatatgtataaatgaatgggaacaaagttggttataacagaaa |
19172834 |
T |
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| Q |
210 |
atgtgaaactgaactaacagaaaaggtaactataacagaaaagcttaactatggttaaatacaattagcaataatcagttaacaaataatcacttaactg |
309 |
Q |
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| T |
19172835 |
atgtgaaactgaactaacagaaaaggta-ctataacagaaaagcttaactatggttaaatacaattagcaataatcagctaacaaataatcacttaactg |
19172933 |
T |
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| Q |
310 |
tattattatcatttcaactgcatgttctttatttttataacagtaaataatcttggttcatgatttacataagtaaagcaaccaagttgaaagaatgttg |
409 |
Q |
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| T |
19172934 |
tattattataatttcaactgcatgttctttatttttgtagcagtaaataatcttggttcatgatttacataagtaaagcaaccaagttgaaagaatgttg |
19173033 |
T |
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| Q |
410 |
gatgtgatgatttaactcccttgcagttttgtatggatttatgaaagtatgagaaatacatcaatttggtccctcagttgacttatctagggaccaaatt |
509 |
Q |
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| T |
19173034 |
gatgtgatgatttaactccctttcagttttgtttaggtttatgaaagtacgagaaatacatcaatttggtccctcagttaacttacctagtgaccaaatt |
19173133 |
T |
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| Q |
510 |
gatcgacaagagtatagtttatggaccatattgatgtatttgtcatagtttacggaccttttaattaattttaatag |
586 |
Q |
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| T |
19173134 |
gatcgacaagagtatagtttatggaccatattgatgtatttctcatactttacggaccttttagttaattttaatag |
19173210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 179 - 372
Target Start/End: Original strand, 19177901 - 19178095
Alignment:
| Q |
179 |
tgaatgggaacaaagttggttataacagaaaatgtgaaactgaactaacagaaaaggtaactataacagaaaagcttaactatggttaaatacaattagc |
278 |
Q |
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| T |
19177901 |
tgaatgggaacaaagttggttataacagaaaatgtgaaa-tgaactaacagaaaagttaactataacagaaaagcttgactatggttaaatacaattaac |
19177999 |
T |
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| Q |
279 |
aataatcagttaacaaataatcacttaactgtattattatcatttcaactgcatgttctttatt--tttataacagtaaataatcttggttcatga |
372 |
Q |
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| T |
19178000 |
aataatcagttaataactaatcacttgactgtattattataatttcaattgcatgttgtttcttaatttataacagtaaagaatcttggttgatga |
19178095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 470 - 585
Target Start/End: Original strand, 19178129 - 19178244
Alignment:
| Q |
470 |
tcaatttggtccctcagttgacttatctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtatttgtcatagtttacggacctt |
569 |
Q |
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| T |
19178129 |
tcaatttggtccctcggttaatttatctagggaccaaattaatgaacaatagtatagtttacgtaccatattgatgtatttctcatagtttccggacttt |
19178228 |
T |
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| Q |
570 |
ttaattaattttaata |
585 |
Q |
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| T |
19178229 |
ttagttgattttaata |
19178244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19172643 - 19172701
Alignment:
| Q |
1 |
cgtcgatgatgaagatgatgatgtgtgttgtttctgtctgttgaatactgatttcaaca |
59 |
Q |
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| T |
19172643 |
cgtcgatgatgaagatgatgatgtgtgttgtttctgtctgttgaatactgatttcaaca |
19172701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 548
Target Start/End: Original strand, 6039505 - 6039596
Alignment:
| Q |
457 |
tatgagaaatacatcaatttggtccctcagttgacttatctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtat |
548 |
Q |
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| T |
6039505 |
tatgagaaatacatcaatttggtctctcaattgactgatctagcgaccaaattgaaagatgagaatagagtttagagatcatattgatgtat |
6039596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 586
Target Start/End: Complemental strand, 29249591 - 29249501
Alignment:
| Q |
495 |
tctagggaccaaattgatcgacaagagtatagtttatggaccatattgatgtatttgtcatagtttacggaccttttaattaattttaatag |
586 |
Q |
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| T |
29249591 |
tctagggactaaattgatggatgagattatagttgagggactacattgat-tatttctcatagtttatggaccttttagtcaattttaatag |
29249501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 586
Target Start/End: Complemental strand, 12607320 - 12607260
Alignment:
| Q |
526 |
gtttatggaccatattgatgtatttgtcatagtttacggaccttttaattaattttaatag |
586 |
Q |
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| T |
12607320 |
gtttagggactaaattgatgtatttttcatagtttatgaaccttttagttgattttaatag |
12607260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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