View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19190_low_4 (Length: 435)
Name: NF19190_low_4
Description: NF19190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19190_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 4763446 - 4763041
Alignment:
| Q |
14 |
aacctgtgcctctaatctcctattctcagattgtagtgtctcaacctttaggttaaacatcttcgcctctatgttacttattttcaacctgttttgaagc |
113 |
Q |
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| T |
4763446 |
aacctgtgcctctaatctcctattctcagattgcagtgtctcaacctttaggttaaacatctttgcctctatgttacttattttcaacctgttttgaagc |
4763347 |
T |
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| Q |
114 |
tccattacaacggtttcttgttctcttagaccacaatattcaagaagttgaacctcgagacttctttccctctcttgaagcattatgaccatgttcttca |
213 |
Q |
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| T |
4763346 |
tccattacaacggtttcttgttctcttagaccacaatattcaagaagttgaacctcgagacttctttccctctcttgaagcattatgaccatgttcttca |
4763247 |
T |
|
| Q |
214 |
gttttctgatctcttgctcatatgcatctttttcaagacttgcatatgttgatggagagtcattgtgctcggggaggagaaaatcgtctttctcgtcatt |
313 |
Q |
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| T |
4763246 |
gttttctgatctcttgctcatatgcatctttttcaagacttgcatatgttgatggagagtcattgtgctcggggaggagaaaatcgtctttctcgtcatt |
4763147 |
T |
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| Q |
314 |
ttgcttagttctcggtgacacaacaattggagaacttctacataccaccttgctgatgcatgtttcttcctgttatcaaagaaatccaacaattttattt |
413 |
Q |
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| T |
4763146 |
tttcttagttctcggtgacacaacaattggagaacttctacataccaccttgctgatgcatgtttcttcctgttatcaaagaaatccaacaattttattt |
4763047 |
T |
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| Q |
414 |
tagttg |
419 |
Q |
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| T |
4763046 |
tagttg |
4763041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 43254230 - 43254370
Alignment:
| Q |
69 |
aacatcttcgcctctatgttacttattttcaacctgttttgaagctccattacaacggtttcttgttctcttagaccacaatattcaagaagttgaacct |
168 |
Q |
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|||||||| |||| || |||||||| ||||| || ||||| |||||||| ||||| |||||||| || || |||||||| || ||||| | ||||||| |
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| T |
43254230 |
aacatctttacctccatattacttatcttcaatctattttggagctccatgacaactgtttcttgctccctaagaccacagtactcaagcaactgaacct |
43254329 |
T |
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| Q |
169 |
cgagacttctttccctctcttgaagcattatgaccatgttc |
209 |
Q |
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| T |
43254330 |
cgagattttgttccttgtcttgaagcaatctaaccatgttc |
43254370 |
T |
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