View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19190_low_8 (Length: 233)

Name: NF19190_low_8
Description: NF19190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19190_low_8
NF19190_low_8
[»] chr7 (26 HSPs)
chr7 (1-233)||(140671-140903)
chr7 (3-167)||(10649836-10650001)
chr7 (59-211)||(21233076-21233233)
chr7 (6-170)||(1882818-1882983)
chr7 (14-155)||(11218676-11218822)
chr7 (3-152)||(31493472-31493626)
chr7 (3-217)||(5530629-5530848)
chr7 (9-170)||(9500866-9501031)
chr7 (39-233)||(18663023-18663222)
chr7 (59-170)||(1873450-1873562)
chr7 (127-209)||(9730937-9731019)
chr7 (3-170)||(18495924-18496092)
chr7 (127-217)||(4819541-4819631)
chr7 (90-181)||(21501898-21501991)
chr7 (88-166)||(5222059-5222139)
chr7 (127-216)||(10941801-10941890)
chr7 (34-85)||(2348382-2348433)
chr7 (127-217)||(3190381-3190471)
chr7 (127-217)||(4786497-4786587)
chr7 (88-211)||(22338740-22338865)
chr7 (107-161)||(9721591-9721647)
chr7 (3-152)||(13708031-13708186)
chr7 (2-122)||(21884570-21884693)
chr7 (161-217)||(9131527-9131583)
chr7 (129-201)||(9313102-9313174)
chr7 (2-82)||(10938166-10938246)
[»] chr1 (12 HSPs)
chr1 (69-211)||(32382317-32382459)
chr1 (59-217)||(34481551-34481714)
chr1 (3-211)||(22620821-22621029)
chr1 (57-211)||(16113509-16113668)
chr1 (90-233)||(16787056-16787201)
chr1 (3-170)||(17442777-17442949)
chr1 (92-152)||(17837884-17837946)
chr1 (127-217)||(9402280-9402370)
chr1 (127-233)||(17120812-17120917)
chr1 (127-233)||(26648338-26648444)
chr1 (127-217)||(31235280-31235370)
chr1 (3-82)||(10825439-10825520)
[»] chr5 (14 HSPs)
chr5 (3-233)||(24261074-24261304)
chr5 (3-211)||(17170884-17171097)
chr5 (13-217)||(24164368-24164577)
chr5 (88-202)||(17635927-17636043)
chr5 (3-152)||(19762661-19762815)
chr5 (4-161)||(23265682-23265844)
chr5 (61-167)||(19085606-19085713)
chr5 (59-211)||(26066738-26066895)
chr5 (3-211)||(17470603-17470816)
chr5 (127-217)||(24661895-24661985)
chr5 (127-217)||(18207581-18207671)
chr5 (7-152)||(9521349-9521499)
chr5 (127-216)||(34488324-34488413)
chr5 (127-202)||(26314360-26314435)
[»] chr2 (19 HSPs)
chr2 (3-211)||(45553683-45553896)
chr2 (3-217)||(45621240-45621463)
chr2 (3-152)||(26291624-26291778)
chr2 (70-143)||(26652688-26652762)
chr2 (127-184)||(17350038-17350095)
chr2 (88-152)||(21072159-21072225)
chr2 (127-217)||(13777117-13777207)
chr2 (3-217)||(27418775-27418995)
chr2 (127-217)||(31804128-31804218)
chr2 (161-233)||(21070903-21070975)
chr2 (39-152)||(25939722-25939840)
chr2 (88-211)||(16075766-16075896)
chr2 (127-217)||(27420050-27420141)
chr2 (39-82)||(29031773-29031816)
chr2 (127-217)||(12950377-12950467)
chr2 (135-217)||(23011076-23011158)
chr2 (128-217)||(20171955-20172044)
chr2 (88-162)||(41789975-41790051)
chr2 (125-217)||(25887213-25887304)
[»] chr6 (9 HSPs)
chr6 (3-211)||(23645100-23645308)
chr6 (3-201)||(2587259-2587463)
chr6 (3-208)||(22565502-22565707)
chr6 (127-211)||(24216215-24216299)
chr6 (127-217)||(1635677-1635766)
chr6 (91-152)||(9291467-9291530)
chr6 (127-211)||(14078805-14078889)
chr6 (27-82)||(1635566-1635621)
chr6 (88-211)||(14726053-14726179)
[»] chr4 (11 HSPs)
chr4 (68-217)||(25024042-25024196)
chr4 (14-147)||(4214958-4215092)
chr4 (127-217)||(19635862-19635952)
chr4 (127-202)||(9264354-9264429)
chr4 (89-152)||(5529080-5529145)
chr4 (5-84)||(12839256-12839335)
chr4 (127-217)||(11781034-11781124)
chr4 (107-161)||(13587858-13587914)
chr4 (127-211)||(19092994-19093078)
chr4 (127-202)||(24638790-24638866)
chr4 (91-152)||(26115297-26115359)
[»] chr3 (14 HSPs)
chr3 (88-230)||(22245939-22246083)
chr3 (3-185)||(21018405-21018584)
chr3 (85-211)||(13907600-13907728)
chr3 (3-166)||(6290371-6290539)
chr3 (129-211)||(16245045-16245127)
chr3 (3-143)||(820920-821065)
chr3 (127-217)||(3115734-3115824)
chr3 (127-217)||(5509028-5509118)
chr3 (89-150)||(314704-314767)
chr3 (127-230)||(8116269-8116372)
chr3 (135-233)||(19171159-19171257)
chr3 (131-211)||(2166991-2167071)
chr3 (129-185)||(12772268-12772324)
chr3 (127-211)||(41509154-41509238)
[»] chr8 (10 HSPs)
chr8 (1-152)||(5052318-5052474)
chr8 (3-82)||(17965561-17965640)
chr8 (127-217)||(13314316-13314406)
chr8 (88-170)||(30486849-30486933)
chr8 (3-122)||(17977161-17977283)
chr8 (127-217)||(28276109-28276199)
chr8 (127-216)||(24584177-24584266)
chr8 (59-152)||(24905238-24905336)
chr8 (134-210)||(2637696-2637772)
chr8 (127-211)||(21315321-21315405)
[»] scaffold0019 (1 HSPs)
scaffold0019 (91-152)||(183876-183939)
[»] scaffold0011 (1 HSPs)
scaffold0011 (128-188)||(156387-156447)
[»] scaffold0672 (1 HSPs)
scaffold0672 (88-152)||(4513-4579)
[»] scaffold0001 (1 HSPs)
scaffold0001 (127-217)||(81292-81382)
[»] scaffold0008 (1 HSPs)
scaffold0008 (161-217)||(55590-55646)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 140671 - 140903
Alignment:
Q  1 tttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140671 tttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagtta 140770  T
Q  101 ctgggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctccta 200  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  140771 ctgggttgatttaagtcgtgaagtcgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtcacctccta 140870  T
Q  201 agcacttactaatagggactactaactttcggt 233  Q
    || |||||||||||||| |||||||||||||||    
T  140871 agtacttactaatagggtctactaactttcggt 140903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 10649836 - 10650001
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    ||||||||| |||||||||||| | ||||||||||| ||||| || |||  |  |||||||| | ||||||| ||| ||| |||||| |||||||| |||    
T  10649836 tgaatcttaaaagtacataacacattctctatcttaatagttatataaacagtcaaccctattagcgtctactttatcaagggaagataatggagtcact 10649935  T
Q  103 gggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagca 167  Q
    | | |||||||||||||||| || | |||||||||||||||||||||||||  |||||||||||||    
T  10649936 gagctgatttaagtcatgaagtcatagtttccttaattactaactagttactacttgatttcagca 10650001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 21233076 - 21233233
Alignment:
Q  59 ccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacc 153  Q
    |||||||| ||||||||||||||| |   || ||||||||| |||||||||||||||||||| |||| ||   |||||| |||||||||||||||||||     
T  21233076 ccctatcagcgtctaccttaccaaagtacgaggagaatggaattactgggttgatttaagtcgtgaagtcacttgtttcgttaattactaactagttaca 21233175  T
Q  154 tcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    || |  |||||||| ||| |||||||||||||||| ||| ||||||||| ||||||||    
T  21233176 tcctactttcagcaaattttactcaatattagttatgtcacctcctaagtacttacta 21233233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 1882818 - 1882983
Alignment:
Q  6 atcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttactggg 105  Q
    ||||||||||||||||||| || |||| ||||||||||| || ||| ||  | || |||||  || |||||||| || | ||||||||||||||| ||||    
T  1882818 atcttagaagtacataacacacactctctcttagtagttctagaaacgggaagccatatcagtgtataccttacaaaggaaagagaatggagttattggg 1882917  T
Q  106 ttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagat 170  Q
     ||||||||||| |||| || | |||||||||||||||||||| ||||  |||||||||| |||||    
T  1882918 ctgatttaagtcgtgaagtcatagtttccttaattactaactacttactacttgatttcaacagat 1882983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 11218822 - 11218676
Alignment:
Q  14 agtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgat 110  Q
    ||||||||||| ||||||  | | ||||||| |||||| ||  | |||||||| ||| ||||||||||| |   || ||||||||||| |||||| ||||    
T  11218822 agtacataacacactctccttatcagtagttctacaaacgggaagccctatcagcgtataccttaccaaggtgcgaggagaatggagtaactgggctgat 11218723  T
Q  111 ttaagtcatgaaatcg--tgtttccttaattactaactagttacctc 155  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||    
T  11218722 ttaagtcatgaagtcgcttgtttccttaattactaactagttacctc 11218676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 31493472 - 31493626
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa---tggaagagaatggagtt 99  Q
    |||||||||| ||||||||||| ||||||  ||||||||||| ||||||  |  | ||||||||||||||||||||||||   | || ||||||||||||    
T  31493472 tgaatcttaggagtacataacacactctccctcttagtagttctacaaacaggcagccctatcaacgtctaccttaccaaggtttgaggagaatggagtt 31493571  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
     ||| |  |||||||||| ||||||  | |||||||||||||| |||||||||||    
T  31493572 gctgagccgatttaagtcttgaaatcacttgtttccttaattaataactagttac 31493626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 5530629 - 5530848
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    ||||||||| | |||||||||| ||||||  |||  |||||| |||||| ||  | |||||||  | ||||||||||||| |   |  ||||||||||||    
T  5530629 tgaatcttatatgtacataacacactctccctctcggtagttctacaaatgggcacccctatcggcatctaccttaccaaggtgcgtggagaatggagtt 5530728  T
Q  100 actgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctc 197  Q
    | |||| ||||||||||| ||||  |   ||||||||||||||||||||||||||  | |||||||||||||||    ||||||||||||| |||  |||    
T  5530729 attgggctgatttaagtcgtgaagccacttgtttccttaattactaactagttactgcctgatttcagcagatttgcatcaatattagttatgtcgactc 5530828  T
Q  198 ctaagcacttactaataggg 217  Q
    ||||| |||||||| |||||    
T  5530829 ctaagtacttactattaggg 5530848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 9500866 - 9501031
Alignment:
Q  9 ttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactggg 105  Q
    |||||||||||||||| ||||||  |||  |||||| |||||| ||  | |||||||||||||||||||||||| |   || ||||||||||||| ||||    
T  9500866 ttagaagtacataacaaactctccctctcggtagttctacaaacggcca-ccctatcaacgtctaccttaccaaggtgcgaggagaatggagttattggg 9500964  T
Q  106 ttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagat 170  Q
     || |||||||| |||| |  | |||||| ||||||||||||||||||   | ||||||||||||||    
T  9500965 atggtttaagtcgtgaagtcacttgtttcattaattactaactagttataacctgatttcagcagat 9501031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 18663023 - 18663222
Alignment:
Q  39 gtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaat--cgtgtttcc 133  Q
    |||||| |||||| ||| |||||||||| ||||||||||||||| |   || || |||| || | |||||||||||||||||||||| |  | || || |    
T  18663023 gtagttctacaaacggacaaccctatcagcgtctaccttaccaaggtttgaggataatgaagatgctgggttgatttaagtcatgaagtcacatgctttc 18663122  T
Q  134 ttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagggactactaactttcggt 233  Q
    ||||||| ||||||||||| || |   |||| |||| | |||||||||||||| | ||| ||||||||| | |||||| ||| | | ||| |||||||||    
T  18663123 ttaattaataactagttacatcctatgttcaacagactttactcaatattagtaatgtcacctcctaagtatttactactagagtcaactcactttcggt 18663222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 1873450 - 1873562
Alignment:
Q  59 ccctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctctt 157  Q
    ||||||||  || ||||||||||| | ||||||  ||||||| |||| ||||||||||| |||| || | |||||||||||||||||||| ||||  |||    
T  1873450 ccctatcagtgtataccttaccaaggaaagagagcggagttattgggctgatttaagtcgtgaagtcatagtttccttaattactaactacttactactt 1873549  T
Q  158 gatttcagcagat 170  Q
    ||||||| |||||    
T  1873550 gatttcaacagat 1873562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 9731019 - 9730937
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttac 209  Q
    |||||||||||||| |||||||||||||| |    |||||||||| |||||||||||||| | ||| ||||||||| ||||||    
T  9731019 tgtttccttaattattaactagttacctcctaggctcagcagattttactcaatattagtaatgtcacctcctaagtacttac 9730937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 18495924 - 18496092
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    |||||||||||| ||||||| | | ||||  ||||||||||| | |||| ||  | |||||||| | ||||  ||  ||| | ||||||||||||||| |    
T  18495924 tgaatcttagaaatacataagacattctccctcttagtagttctgcaaacgggcagccctatcagcatctattttgtcaaggaaagagaatggagttatt 18496023  T
Q  103 gggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagat 170  Q
    ||| | ||||||||| |||| || | |||| ||||||||||||||| ||||  |||||||| |||||||    
T  18496024 gggcttatttaagtcgtgaagtcatagttttcttaattactaactacttactacttgatttaagcagat 18496092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 4819541 - 4819631
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||||||||||||| |||||||||||||| |   || |||| ||| |||||||||||||| | ||| |||||| || |||||||| |||||    
T  4819541 tgtttccttaattattaactagttacctcctaggtttagcaaattttactcaatattagtaatgtcacctccttagtacttactactaggg 4819631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 21501898 - 21501991
Alignment:
Q  90 gaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaata 181  Q
    ||||||| ||||| || ||||||||||||||||||  | ||| |||| ||||||||||||||||| || || |||||| | ||| |||||||||    
T  21501898 gaatggacttactaggatgatttaagtcatgaaatcacttgtatcctaaattactaactagttacatcctggtttcagtaaattttactcaata 21501991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 5222139 - 5222059
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagc 166  Q
    ||||||| ||||||| || ||||||||| |||||| ||   ||||||||||||||||||||||||||  | ||||||||||    
T  5222139 gagaatgaagttacttggctgatttaagacatgaagtcacttgtttccttaattactaactagttacaacctgatttcagc 5222059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 10941890 - 10941801
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagg 216  Q
    |||||||||||||| |||||||||||||| |   |||| |||||| |||||||||| ||| |  || ||||||||| |||||||| ||||    
T  10941890 tgtttccttaattattaactagttacctccttggttcaacagattttactcaatatcagtaatatcacctcctaagtacttactactagg 10941801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 2348433 - 2348382
Alignment:
Q  34 tcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatgg 85  Q
    ||||||||||| |||||| ||  |||||||||| ||||||||||||||||||    
T  2348433 tcttagtagttctacaaacgggcaaccctatcagcgtctaccttaccaatgg 2348382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 3190471 - 3190381
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||| |||||| ||||||||||| || |   |||| || ||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  3190471 tgtttccctaattaataactagttacatcatatgttcaacatattttactcaatattagtaatgtcacctcctaagtacttactactaggg 3190381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 4786497 - 4786587
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||||||||||||| |||||| ||| ||| |   ||||||| ||| |||||||||||||| | ||| |||||| || |||||||| |||||    
T  4786497 tgtttccttaattattaactaattatctcctaggttcagcaaattttactcaatattagtaatgtcacctccttagtacttactactaggg 4786587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 22338865 - 22338740
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 185  Q
    ||||||||||||||| || |||| ||| ||||||| ||   |||||| ||||||||||  ||||||| || |  |||| | ||||| || ||||||||||    
T  22338865 gagaatggagttactaggatgatataaatcatgaagtcacttgtttcattaattactatttagttacatcctagtttctgaagattttattcaatattag 22338766  T
Q  186 ttacgtctcctcctaagcacttacta 211  Q
    | | ||| ||||||||| ||||||||    
T  22338765 tcatgtcacctcctaagtacttacta 22338740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 9721591 - 9721647
Alignment:
Q  107 tgatttaagtcatgaaatcgt--gtttccttaattactaactagttacctcttgatt 161  Q
    ||||||||||| |||| ||||  |||| |||||||||||||||||||| ||||||||    
T  9721591 tgatttaagtcgtgaagtcgtctgttttcttaattactaactagttacttcttgatt 9721647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 13708031 - 13708186
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaa-gggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagt 98  Q
    ||||||||||||| ||||| || ||||||  |||| |||||| |||||| |||  ||||||||||  |||||||||||||| | |||   ||| ||||||    
T  13708031 tgaatcttagaagcacatagcacactctccctcttggtagttatacaaacggggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagt 13708130  T
Q  99 tactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
    ||||| | | ||||||||| |||| |  | | |||||| |||||||||||||||||    
T  13708131 tactgagcttatttaagtcgtgaagtcacttatttcctcaattactaactagttac 13708186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 21884693 - 21884570
Alignment:
Q  2 ttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa---tggaagagaatggagt 98  Q
    |||||||||||||| |||||  | ||||||  ||| ||||||| |||||| |   |||||||| | |||||||||||||||   | || ||||||| |||    
T  21884693 ttgaatcttagaagaacatatgacactctccctctcagtagttctacaaacgtgtaaccctataagcgtctaccttaccaaagttcgaggagaatgaagt 21884594  T
Q  99 tactgggttgatttaagtcatgaa 122  Q
    ||||||| ||| ||||||| ||||    
T  21884593 tactgggctgaattaagtcgtgaa 21884570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 9131527 - 9131583
Alignment:
Q  161 ttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||| ||||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  9131527 ttcagtagattttactcaatattagtaatgtcacctcctaagtacttactactaggg 9131583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 9313102 - 9313174
Alignment:
Q  129 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaa 201  Q
    ||||| |||||| ||||||||||| ||||   ||||||||||| |||||| ||||||| | ||| ||||||||    
T  9313102 tttccctaattaataactagttacatcttaggttcagcagattttactcagtattagtaatgtcacctcctaa 9313174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 10938166 - 10938246
Alignment:
Q  2 ttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 82  Q
    ||||||||||||||||||||||| ||||||  | |  | |||| |||||| ||  |||||||| | |||||||||||||||    
T  10938166 ttgaatcttagaagtacataacacactctccctttctggagttctacaaacgggtaaccctataatcgtctaccttaccaa 10938246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 32382459 - 32382317
Alignment:
Q  69 gtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgatttcagcag 168  Q
    |||||||||||||| |||||| |||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||     
T  32382459 gtctaccttaccaagggaagaaaatggagttattgggttaacttaagtcatgaagtcgtgtttccttaattactaactagttacctctcgatttcaacat 32382360  T
Q  169 attctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    ||| |||||||||||||||| ||| ||||||||| ||||||||    
T  32382359 attttactcaatattagttatgtcacctcctaagtacttacta 32382317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 34481551 - 34481714
Alignment:
Q  59 ccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacc 153  Q
    ||||||||||| ||||||||| ||||   || ||||||| ||||| ||||||||||||||||||||| |  | ||||||||||||||||||||||||||     
T  34481551 ccctatcaacgcctaccttacgaatgtgcgaggagaatgcagttattgggttgatttaagtcatgaagtcacttgtttccttaattactaactagttaca 34481650  T
Q  154 tcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||    |||| || ||| ||||||||| |||| | ||  ||||||||| |||||||| |||||    
T  34481651 tctcaggttcaacaaattttactcaataatagtaatgttacctcctaagtacttactactaggg 34481714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 22620821 - 22621029
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    ||||||||||||||||||| || | | | | ||||| ||||| ||||||  || |||||||||  ||||||||| || || |||| |||||||||||| |    
T  22620821 tgaatcttagaagtacatatcacaatatttctcttaatagttctacaaacagacaaccctatccgcgtctacctaactaagggaa-agaatggagttatt 22620919  T
Q  103 gggttgatttaagtcatgaaatcgtgttt-ccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaa 201  Q
    ||| ||||||||||  |||| || | ||| |||||||||||||||| |||  || ||||||||| ||||  |||||||| ||||||| ||| |||| | |    
T  22620920 gggctgatttaagttctgaagtcttattttccttaattactaactacttatttcctgatttcagtagatgttactcaatcttagttatgtcacctcatga 22621019  T
Q  202 gcacttacta 211  Q
    | ||||||||    
T  22621020 gtacttacta 22621029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 16113509 - 16113668
Alignment:
Q  57 aaccctatcaacgtctaccttaccaatggaagagaa---tggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagtta 151  Q
    |||||||||| ||||||||||||||| |   |||||   |||| ||| ||||||| |||||||| | || ||   |||||||||||||||||||||||||    
T  16113509 aaccctatcagcgtctaccttaccaaggtgtgagaaaaatggatttattgggttgctttaagtcgtaaagtcacttgtttccttaattactaactagtta 16113608  T
Q  152 cctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    | || ||||||||||| ||| |||| |||| || ||| ||| ||||||||| ||||||||    
T  16113609 catcctgatttcagcaaattttactaaataataattatgtcacctcctaagtacttacta 16113668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 16787201 - 16787056
Alignment:
Q  90 gaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtt 187  Q
    ||||| ||||| | || |||||||||||||||| ||   |||||||||||||| ||||||||||| ||||   |||| |||||| |||||||||| | |     
T  16787201 gaatgaagttattaggctgatttaagtcatgaagtcacttgtttccttaattaataactagttacatcttaggttcaacagattttactcaatatgatta 16787102  T
Q  188 acgtctcctcctaagcacttactaatagggactactaactttcggt 233  Q
    | ||| |||| |||| |||||||||| ||| |||||  ||||||||    
T  16787101 atgtcacctcttaagtacttactaattgggtctactccctttcggt 16787056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 17442777 - 17442949
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagag---aatggagtt 99  Q
    ||||||||||||||||||| || |||| |  |||  |||||| |||||| ||  |||||||||| ||||||||||||||| | || ||   ||   ||||    
T  17442777 tgaatcttagaagtacatagcacactcgccctctcggtagttctacaaacgggaaaccctatcagcgtctaccttaccaaggtaaaagaaaaacaaagtt 17442876  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagat 170  Q
    |||||| | ||||||||| |||| |  | ||||| ||||||||||||||||||||    ||||||||||||||    
T  17442877 actgggcttatttaagtcctgaagtcacctgttttcttaattactaactagttactatctgatttcagcagat 17442949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 17837884 - 17837946
Alignment:
Q  92 atggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 152  Q
    |||||||||||||| ||||||||||| |||| ||   ||||||||||||||||||||||||||    
T  17837884 atggagttactgggatgatttaagtcgtgaagtcacttgtttccttaattactaactagttac 17837946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 9402280 - 9402370
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||||||||||||| ||||| |   ||||||| ||| |||| | ||||||| | ||| ||||||||| |||||||| |||||    
T  9402280 tgtttccttaattactaactagtcacctcctaggttcagcaaattttacttagtattagtaatgtcacctcctaagtacttactactaggg 9402370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 17120917 - 17120812
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagggactactaac 226  Q
    ||||||||||||||  |||||||||| || |   |||| |||||| |||||||||||||| | ||| ||||||||| |||||||| ||||| |||||  |    
T  17120917 tgtttccttaattagcaactagttacatcctaggttca-cagattttactcaatattagtaatgtcacctcctaagtacttactactagggtctactcgc 17120819  T
Q  227 tttcggt 233  Q
    |||||||    
T  17120818 tttcggt 17120812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 26648444 - 26648338
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagggactactaac 226  Q
    ||||||| ||||  |||||||||||||||||   ||||||||||| |||||| | ||||| | ||| ||||| ||| |||||||| ||||| | ||| ||    
T  26648444 tgtttccctaatctctaactagttacctctttggttcagcagattttactcagtcttagtaatgtcacctccaaagtacttactactagggtcaactcac 26648345  T
Q  227 tttcggt 233  Q
    |||||||    
T  26648344 tttcggt 26648338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 31235370 - 31235280
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||||||||||||||||||| |    |||||||||| |||||| |||| || | ||| ||||||||| | |||||| |||||    
T  31235370 tgtttccttaattactaactagttacctcctaggctcagcagattttactcagtattggtaatgtcacctcctaagtatttactactaggg 31235280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10825439 - 10825520
Alignment:
Q  3 tgaatcttagaagtacataacatactctc---tatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 82  Q
    |||||||||||||| ||||||| ||||||   || |||||||||| |||||| ||| |||||||||  | |||||||||||||    
T  10825439 tgaatcttagaagttcataacacactctctcttaccttagtagttctacaaacggacaaccctatc-ccatctaccttaccaa 10825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 24261074 - 24261304
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    ||||||||||| ||||||| || ||| | ||||||||||||| |||||| ||  | |||||||| ||||||||||||| | || ||||||||||||||||    
T  24261074 tgaatcttagacgtacatagcacactttatatcttagtagttatacaaacgggtagccctatcagcgtctaccttaccgagggtagagaatggagttact 24261173  T
Q  103 gggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaag 202  Q
    | | |||||||| | |||||  |  ||||||||| || ||||||||||| || |||||||||||||||| ||||||||| |||||| ||  |||||||||    
T  24261174 gagctgatttaatttatgaagacacgtttccttattttctaactagttagcttttgatttcagcagattttactcaataatagttatgttacctcctaag 24261273  T
Q  203 cacttactaatagggactactaactttcggt 233  Q
     ||||||||  |||| ||| | |||||||||    
T  24261274 tacttactatcagggtctaatcactttcggt 24261304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 17171097 - 17170884
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||||||||| ||||||||||| ||||||  ||||  ||||| ||||||  |  | |||||||| ||||||||||||||| |   || ||||||||| ||    
T  17171097 tgaatcttagcagtacataacacactctccctcttgatagttctacaaacaggcagccctatcagcgtctaccttaccaaggtttgaggagaatggaatt 17170998  T
Q  100 actgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctc 197  Q
    |||||  |||||||||||||||| |||  | |||||||||||| ||||||||||| || |   |||| |||||| ||||||| |||||| | ||| ||||    
T  17170997 actggcctgatttaagtcatgaagtcgcctatttccttaattaataactagttacatcctaggttcaacagattttactcaaaattagtaatgtcacctc 17170898  T
Q  198 ctaagcacttacta 211  Q
    ||||| ||||||||    
T  17170897 ctaagtacttacta 17170884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 24164577 - 24164368
Alignment:
Q  13 aagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttga 109  Q
    ||||||||| || ||||||  |||||||| || |||||| ||  | |||||||| ||||||||||||||| |   |||||||||||| |||||||| |||    
T  24164577 aagtacatagcacactctccctcttagtacttctacaaatgggcagccctatcagcgtctaccttaccaaggttcgaagagaatggaattactgggctga 24164478  T
Q  110 tttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcactt 207  Q
    ||||||||||||| |  | |||||||||||||| ||||||||||| || |  ||| |||| ||| |||| ||||||||  | ||| |||| |||| ||||    
T  24164477 tttaagtcatgaagtcacttgtttccttaattaataactagttacatcctatttttagcatattttactaaatattagcaatgtcacctcataagtactt 24164378  T
Q  208 actaataggg 217  Q
    |||| |||||    
T  24164377 actactaggg 24164368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 17635927 - 17636043
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 185  Q
    |||||| ||||||| |||  |||||||||| |||| ||   |||||||||||||| ||||||||||  || ||||||||||||||| |||||||||||||    
T  17635927 gagaatagagttaccgggcagatttaagtcgtgaagtcacttgtttccttaattattaactagttatatcctgatttcagcagattttactcaatattag 17636026  T
Q  186 ttacgtctcctcctaag 202  Q
    ||| ||| | |||||||    
T  17636027 ttatgtcacgtcctaag 17636043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 19762815 - 19762661
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaag-agaatggagtt 99  Q
    ||||||||||||||||||  || ||||||  |||  |||||| | |||| ||| | |||||||| |||||||||||||||  || ||| |||||||||||    
T  19762815 tgaatcttagaagtacattgcacactctccctctcggtagttctccaaacggacagccctatcagcgtctaccttaccaaggtgcaagaagaatggagtt 19762716  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
    | |||| ||||||||| | |||| |  | ||||||||||||||||||||||||||    
T  19762715 attgggctgatttaagacgtgaagtcacttgtttccttaattactaactagttac 19762661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 23265682 - 23265844
Alignment:
Q  4 gaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagtta 100  Q
    |||||||||||| |||||||| |||||| ||||  |||||| |||||| |   |||||||||||| ||||||||||||| | |||  ||||||| |||||    
T  23265682 gaatcttagaagcacataacacactctccatctcggtagttctacaaacgagcaaccctatcaacatctaccttaccaaggtgaaaggagaatgaagtta 23265781  T
Q  101 ctgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatt 161  Q
     |||| ||||||||||| |||| |  | |||||||||||||| ||||||| ||| || |||||    
T  23265782 ttgggctgatttaagtcgtgaagtcacatgtttccttaattagtaactagctacttcctgatt 23265844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 19085713 - 19085606
Alignment:
Q  61 ctatcaacgtctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttga 159  Q
    |||||| | ||||||||||||||| || |||||||||||| || | ||||||||||  |||| || | |||||||||||||||||||| ||||| | |||    
T  19085713 ctatcagcatctaccttaccaatgaaaaagaatggagttaatgtgctgatttaagttgtgaagtcatagtttccttaattactaactacttaccacctga 19085614  T
Q  160 tttcagca 167  Q
    ||||||||    
T  19085613 tttcagca 19085606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 26066738 - 26066895
Alignment:
Q  59 ccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacc 153  Q
    |||||||| |||||| |||||||| |   || |||||||||||||||    ||||||||||| |||| |  | ||||||||||| |||||| |||||||     
T  26066738 ccctatcagcgtctaacttaccaaggtgcgaggagaatggagttactacactgatttaagtcgtgaagtaacttgtttccttaagtactaattagttact 26066837  T
Q  154 tcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
     | ||||||||||| ||| |  ||||||||||||| ||| ||||||||| ||||||||    
T  26066838 acctgatttcagcatattttcatcaatattagttatgtcacctcctaagtacttacta 26066895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 17470816 - 17470603
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||||||||| ||||||||||| ||||||  ||| ||||||| |||||| ||  | ||||||||  |||||||||||||| |   || ||||||| ||||    
T  17470816 tgaatcttaggagtacataacaaactctccctctcagtagttctacaaacgggaatccctatcagtgtctaccttaccaaggtgcgaggagaatgaagtt 17470717  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctc 197  Q
    | |||  | ||||||| |||||| |  | |||||||||||||| ||| ||||||| || |   |||| || ||| |||||||||||| | | |   ||||    
T  17470716 attggactaatttaagacatgaagtcacttgtttccttaattaataattagttacatcctagattcaacatattttactcaatattaataatgcaacctc 17470617  T
Q  198 ctaagcacttacta 211  Q
    ||||||||||||||    
T  17470616 ctaagcacttacta 17470603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 24661985 - 24661895
Alignment:
Q  127 tgtttccttaattactaactagttacctctt-gatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||| |||||| ||||||||||| || | ||||| |||||||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  24661985 tgtttccctaattaataactagttacatcctagattt-agcagattttactcaatattagtaatgtcacctcctaagtacttactactaggg 24661895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 18207671 - 18207581
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||| |||||| ||||||||||| ||||   || |||||||| |||||||||||| | | ||| ||||||||| |||||||| |||||    
T  18207671 tgtttccctaattaataactagttacatcttaggtttagcagattttactcaatattaataatgtcacctcctaagtacttactactaggg 18207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 9521349 - 9521499
Alignment:
Q  7 tcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagttactg 103  Q
    ||||||||||||||| || ||||||  |||  |||||| |||||| ||| |||||||||| ||||||| |||| || | |||  ||||||||||||| |     
T  9521349 tcttagaagtacatagcacactctccctctcggtagttctacaaacggacaaccctatcatcgtctactttacgaaggtgaaaggagaatggagttatta 9521448  T
Q  104 ggttgatttaagtcatgaaatc--gtgtttccttaattactaactagttac 152  Q
       ||||||||||| | || ||   ||||||||||||||||||||||||||    
T  9521449 tactgatttaagtcgtaaagtcaattgtttccttaattactaactagttac 9521499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 34488324 - 34488413
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagg 216  Q
    ||||||| |||||| ||||||||||| || |   ||||||||||| |||| ||||||||| | ||| ||||||||| | |||||| ||||    
T  34488324 tgtttccctaattaataactagttacatcctaggttcagcagattttactgaatattagtaatgtcacctcctaagtatttactactagg 34488413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 26314360 - 26314435
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctac-tcaatattagttacgtctcctcctaag 202  Q
    ||||||||||||||||||||| ||||  |  |||||||||||| ||| | ||||||||||||| ||| |||||||||    
T  26314360 tgtttccttaattactaactacttactaccagatttcagcaga-tctgcatcaatattagttatgtcacctcctaag 26314435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 45553683 - 45553896
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||||||||| ||| ||||||| |||||   |||| |||||| |||||| ||  | |||||||| || |||||||||||| |   || ||||||||||||    
T  45553683 tgaatcttaggagtgcataacacactcttcctcttggtagttctacaaatgggcagccctatcagcgactaccttaccaaggtgtgaggagaatggagtt 45553782  T
Q  100 actgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctc 197  Q
    |||| | |||||||||||||||| ||   |||||||||||||||||||||||||| ||||| ||| || ||||| ||||| |||||| | | ||| ||||    
T  45553783 actgtgctgatttaagtcatgaagtcacttgtttccttaattactaactagttacatcttggttttagtagattttactcgatattaataatgtcacctc 45553882  T
Q  198 ctaagcacttacta 211  Q
    ||||| ||||||||    
T  45553883 ctaagtacttacta 45553896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 45621463 - 45621240
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||| ||||||||||||||| | | |||   |||| |||||| |||||| ||| |||||||||||||||||||||||||| |   || ||||||| ||||    
T  45621463 tgaaccttagaagtacataagacaatcttcctcttggtagttctacaaacggacaaccctatcaacgtctaccttaccaaggtgcgaggagaatgaagtt 45621364  T
Q  100 actgggttgatttaagtcatgaa--atcgtgtttccttaattactaactagttacct----cttgatttcagcagattctactcaatattagttacgtct 193  Q
    | | || ||||||||||| ||||  | | |||||||||||||||||||||||||| |    | |||||||||||||||    ||||||||||||  |||     
T  45621363 agtaggctgatttaagtcgtgaagtaacttgtttccttaattactaactagttacttactacatgatttcagcagatttgcatcaatattagttgtgtca 45621264  T
Q  194 cctcctaagcacttactaataggg 217  Q
    ||||||||| |||||||| |||||    
T  45621263 cctcctaagtacttactattaggg 45621240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 26291624 - 26291778
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||||||||||||||||||||| ||||||  |||  |||||| ||||||  || | |||||| | ||||||||||||||| |   || ||||||||||||    
T  26291624 tgaatcttagaagtacataacacactctccttctcggtagttttacaaactgacagccctatgagcgtctaccttaccaaagtgtgaggagaatggagtt 26291723  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
    | |||| ||||||||||| |||| |  | ||||||||||||||||||||| ||||    
T  26291724 attgggctgatttaagtcgtgaagtcacttgtttccttaattactaactaattac 26291778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 26652762 - 26652688
Alignment:
Q  70 tctaccttaccaatggaagagaatggagttactgggttgatttaagtcatgaaatc-gtgtttccttaattacta 143  Q
    ||||||||||||| | ||||||||| ||||||| ||||||||||||||||||| ||   ||||||||||||||||    
T  26652762 tctaccttaccaaggaaagagaatgaagttactaggttgatttaagtcatgaagtcacagtttccttaattacta 26652688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 17350038 - 17350095
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatatta 184  Q
    ||||||||||||||||||||||||||||| | | ||||||||||| |||||| |||||    
T  17350038 tgtttccttaattactaactagttacctcctaagttcagcagattttactcactatta 17350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 21072225 - 21072159
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
    ||||||||||||||| || |||||||||||||||| |  | |||||||| |||||||||||||||||    
T  21072225 gagaatggagttactaggctgatttaagtcatgaagtcacttgtttcctcaattactaactagttac 21072159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 13777117 - 13777207
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||  ||||||||||||||| |   ||||||||||| |||||| | ||||| | ||| ||||||||| |||||||| |||||    
T  13777117 tgtttccttaatctctaactagttacctcctaggttcagcagattttactcagtcttagtaatgtcacctcctaagtacttactactaggg 13777207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 27418775 - 27418995
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaagag-aatggagtt 99  Q
    |||||||||||| ||||||||| | |||   ||| |||||||||||||| ||  | |||||||  ||||||||||||||   || ||||  |||||||||    
T  27418775 tgaatcttagaaatacataacacattcttcctctcagtagttgtacaaacggttatccctatccgcgtctaccttaccagggtgaaagaataatggagtt 27418874  T
Q  100 actgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcct- 196  Q
      |||| | ||||||||| | || ||   |||||||||||||||||||||||||   | ||||||||||||||| |  |||||||||| || ||  |||     
T  27418875 tttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatcaatattaggtatgtaacctc 27418974  T
Q  197 cctaagcacttactaataggg 217  Q
    |||||| ||||||||| ||||    
T  27418975 cctaagtacttactaacaggg 27418995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 31804218 - 31804128
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||||||||||||||||||| |   ||||||||||| |||||  ||||| | | ||| ||| ||||| |||||||| |||||    
T  31804218 tgtttccttaattactaactagttacctcctaggttcagcagattttactcggtattattaatgtcaccttctaagtacttactactaggg 31804128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 21070975 - 21070903
Alignment:
Q  161 ttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagggactactaactttcggt 233  Q
    ||||||||||| || ||||||||||| | ||| ||||| ||||||||||||  |||| ||||| |||||||||    
T  21070975 ttcagcagattttagtcaatattagtaatgtcacctccgaagcacttactaccagggtctactcactttcggt 21070903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 25939722 - 25939840
Alignment:
Q  39 gtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttcc 133  Q
    |||||| |||||| || ||  ||||||| ||||||||||||||| | |||  ||||||||| |||||||  | |||||||||||||| ||   |||||||    
T  25939722 gtagttctacaaacggggagacctatcagcgtctaccttaccaaggtgaaaggagaatggaattactggacttatttaagtcatgaagtcacatgtttcc 25939821  T
Q  134 ttaattactaactagttac 152  Q
    |||||||||||||| ||||    
T  25939822 ttaattactaactaattac 25939840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 16075896 - 16075766
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctc-----ttgatttcagcagattctactcaat 180  Q
    |||||| ||||||||||| |  |||||||| |||| |  | |||||||||||||||||||||||||| ||     || ||||||  || || ||||||||    
T  16075896 gagaattgagttactgggctattttaagtcgtgaagttacttgtttccttaattactaactagttacatcctgatttaatttcaaaagtttttactcaat 16075797  T
Q  181 attagttacgtctcctcctaagcacttacta 211  Q
    |||||||| ||| ||||||||| | ||||||    
T  16075796 attagttatgtcacctcctaagtatttacta 16075766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 27420050 - 27420141
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcct-cctaagcacttactaataggg 217  Q
    |||||||||||||||||||||||||   | ||||||||||||||| |  |||||||||| || ||  ||| |||||| ||||||||| ||||    
T  27420050 tgtttccttaattactaactagttattacctgatttcagcagattttcatcaatattaggtatgtaacctccctaagtacttactaacaggg 27420141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 29031773 - 29031816
Alignment:
Q  39 gtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 82  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||    
T  29031773 gtagttctacaaacggacaaccctatcaacgtctaccttaccaa 29031816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 12950467 - 12950377
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||||||||| ||||||||| |   |||| || ||| |||||| ||||||| | ||| ||||||||  |||||||| |||||    
T  12950467 tgtttccttaattactaacaagttacctcctaggttcaacatattttactcagtattagtaatgtcgcctcctaaatacttactactaggg 12950377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 23011158 - 23011076
Alignment:
Q  135 taattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||||| ||||||||||| ||||   ||||| ||||| |||||||||||| | | ||| ||||||||| |||||||| |||||    
T  23011158 taattaataactagttacatctttggttcaggagattttactcaatattattaatgtcacctcctaagtacttactactaggg 23011076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 20172044 - 20171955
Alignment:
Q  128 gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||| | |||||||||||||| |   ||  ||||||| |||| ||||||||| | ||| ||||||||| |||||||| |||||    
T  20172044 gtttccttaataattaactagttacctcctaggttttgcagattttacttaatattagtaatgtcacctcctaagtacttactactaggg 20171955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 41790051 - 41789975
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgattt 162  Q
    ||||||| |||||||| | ||| |||||||||||| ||   |||||| ||||||||||||||||||| || ||||||    
T  41790051 gagaatgaagttactgagctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 41789975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 25887304 - 25887213
Alignment:
Q  125 cgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||| |||||||||| |||||||||||||| |   |||| || ||| ||||| |||||||| | ||| ||||||||| |||||||| |||||    
T  25887304 cgtgtctccttaattattaactagttacctcctaggttcatcaaatt-tactccatattagtaatgtcacctcctaagtacttactactaggg 25887213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 23645308 - 23645100
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    ||||||||| |||||||||||| ||||||| ||||||||||| ||||||  |  |  |  |||| |||||||||||| || |||| | ||||||||||||    
T  23645308 tgaatcttataagtacataacacactctctctcttagtagttctacaaacaggcagtctaatcagcgtctaccttactaaaggaa-ataatggagttact 23645210  T
Q  103 gggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaa 201  Q
     || | | ||||||| || | |  | ||||||||||||| |||||| |||| |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  23645209 aggctcaattaagtcgtggagtgatagtttccttaattattaactacttacttcttgatttcagcagatgttactcaatattagttatgtcacctcctaa 23645110  T
Q  202 gcacttacta 211  Q
    | ||||||||    
T  23645109 gtacttacta 23645100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 2587259 - 2587463
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||||||||| |||||||| || ||||||  ||| ||||||| | ||||  || |||||||||| ||||||||||||||| |   || |||||||  |||    
T  2587259 tgaatcttaggagtacatagcacactctccctctcagtagttctccaaacagacaaccctatcagcgtctaccttaccaaggtgcgaggagaatgacgtt 2587358  T
Q  100 actgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactc-aatattagttacgtctcct 196  Q
    ||| || |||||||||||||||| ||   |||||||||||||||||||||||||| || || |||||||| ||| ||||| ||||||||| | ||| |||    
T  2587359 actaggctgatttaagtcatgaagtcacttgtttccttaattactaactagttacatcctggtttcagcaaattttactcaaatattagtaatgtcacct 2587458  T
Q  197 cctaa 201  Q
    |||||    
T  2587459 cctaa 2587463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 22565707 - 22565502
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    |||||||||||||||||||  | ||| ||| ||||||||||| ||||||     |||||||| | ||| |||||||||| ||| | | | ||||||||||    
T  22565707 tgaatcttagaagtacatagaacactatctctcttagtagttctacaaactatcaaccctattagcgtttaccttacca-tggtaaatagtggagttact 22565609  T
Q  103 gggttgatttaagtcatgaaatcgt-gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaa 201  Q
    ||| ||||||||||| || | || | |||||||||||||||||||| |||| || | ||||||||||||  |||||||||||||||| ||  ||||||||    
T  22565608 gggctgatttaagtcgtggagtcatagtttccttaattactaactacttacttcctcatttcagcagatgttactcaatattagttatgttacctcctaa 22565509  T
Q  202 gcactta 208  Q
    | |||||    
T  22565508 gtactta 22565502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 24216215 - 24216299
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| |||||| || ||||||||    
T  24216215 tgtttccttaattactaactagttacctcctgctttcagcagattttactcaatattagttatgtcacctcctcagtacttacta 24216299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 1635677 - 1635766
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||||||||||||| |||||||||||||| |   ||||||||||| |||||||||||||| | ||| ||||||||| | |||||| |||||    
T  1635677 tgtttccttaatta-taactagttacctcataggttcagcagattttactcaatattagtaatgtcacctcctaagtagttactactaggg 1635766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 9291530 - 9291467
Alignment:
Q  91 aatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
    |||||||||| |||| |||||||||||||||| |  | ||||||||||||||| ||||||||||    
T  9291530 aatggagttattgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagttac 9291467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 14078889 - 14078805
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    ||||| ||||||||||||||||||||||| |  ||||| || ||| || ||| ||||||| | ||| ||||||||| ||||||||    
T  14078889 tgtttacttaattactaactagttacctcctagtttcaacatattttattcagtattagtaatgtcacctcctaagtacttacta 14078805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 1635566 - 1635621
Alignment:
Q  27 ctctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 82  Q
    |||||| ||||||||||| |||||| ||| |||| ||||| |||||||||||||||    
T  1635566 ctctctctcttagtagttctacaaacggacaaccatatcagcgtctaccttaccaa 1635621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 14726053 - 14726179
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 185  Q
    ||||||||||||| |||| |||||||  || |||| ||   ||||||||||||||||||||| ||||  | ||||||||||||||  |  ||||||||||    
T  14726053 gagaatggagttaatgggatgatttatttcgtgaagtcacttgtttccttaattactaactacttactacctgatttcagcagatgttcatcaatattag 14726152  T
Q  186 ttacgtctcct-cctaagcacttacta 211  Q
     || ||| ||| |||||| ||||||||    
T  14726153 gtatgtcacctgcctaagtacttacta 14726179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 25024042 - 25024196
Alignment:
Q  68 cgtctaccttaccaatgg---aagagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgattt 162  Q
    ||||||||||||||| ||   | ||||||||| |||||||| |||||||||||||| | ||   |||||||||||||| ||||||||||| || |   ||    
T  25024042 cgtctaccttaccaagggtcgaggagaatggatttactgggatgatttaagtcatgcagtcacttgtttccttaattaataactagttacatcataggtt 25024141  T
Q  163 cagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||| |||||||||||||| | ||| ||||||||| ||||||||||||||    
T  25024142 cagcagattttactcaatattagtaatgtcacctcctaagtacttactaataggg 25024196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 4215092 - 4214958
Alignment:
Q  14 agtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttactgggttgattta 113  Q
    |||||||| || ||||||| ||||||||||| |||||| |   || ||||||| |||||||||||| || | ||||||||||||||| |||  |||||||    
T  4215092 agtacatagcacactctctctcttagtagttctacaaacgtgcaatcctatcaccgtctaccttactaaggaaagagaatggagttattggactgattta 4214993  T
Q  114 agtcatgaaatcgt-gtttccttaattactaacta 147  Q
    | || |||| | || ||||||||||||||||||||    
T  4214992 aatcgtgaagttgtagtttccttaattactaacta 4214958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 19635952 - 19635862
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||||  ||||||||||||| | | |||| || ||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  19635952 tgtttccttaattataaactagttacctcctaagttcaacaaattttactcaatattagtaatgtcacctcctaagtacttactactaggg 19635862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 9264429 - 9264354
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaag 202  Q
    |||||||||||||||||||||||||| |  | ||||||||||||| |||| |||| |||||| | | |||||||||    
T  9264429 tgtttccttaattactaactagttacattctaatttcagcagattttacttaatagtagttatgccacctcctaag 9264354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 5529080 - 5529145
Alignment:
Q  89 agaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 152  Q
    |||||||| ||||||| ||||||||||||||||| |||  ||||| ||||||| ||||||||||||    
T  5529080 agaatggaattactggattgatttaagtcatgaagtcgcctgtttacttaattgctaactagttac 5529145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 12839335 - 12839256
Alignment:
Q  5 aatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg 84  Q
    |||||||||||||||||||| ||||||  |||  |||||| |||||| ||  | |||||| | |||||||||||||||||    
T  12839335 aatcttagaagtacataacacactctccctctcggtagttctacaaacgggcatccctataagcgtctaccttaccaatg 12839256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 11781034 - 11781124
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||||||||||||| ||||| ||||| || |   |||| || ||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  11781034 tgtttccttaattattaacttgttacttcatatgttcaccatattatactcaatattagtaatgtcacctcctaagtacttactagtaggg 11781124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 13587858 - 13587914
Alignment:
Q  107 tgatttaagtcatgaaatcgt--gtttccttaattactaactagttacctcttgatt 161  Q
    ||||||||||| |||| ||||  |||| |||||||||||||||||||| ||||||||    
T  13587858 tgatttaagtcgtgaagtcgtctgttttcttaattactaactagttacttcttgatt 13587914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 19092994 - 19093078
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    ||||||| |||||| ||||||||||| || |   |||| |||||| |||||| ||||||| | ||| ||||||||| ||||||||    
T  19092994 tgtttccctaattaataactagttacatcctatgttcaacagattttactcagtattagtaatgtcacctcctaagtacttacta 19093078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 24638866 - 24638790
Alignment:
Q  127 tgtttccttaattact-aactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaag 202  Q
    |||||||||||||| | ||||||||||||| |   ||||||| ||| |||||||||||||| | ||| |||||||||    
T  24638866 tgtttccttaattatttaactagttacctcctaggttcagcaaattttactcaatattagtaatgtcacctcctaag 24638790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 26115359 - 26115297
Alignment:
Q  91 aatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 152  Q
    ||||||||||||||| ||||| |||||||||| ||   |||||||| |||||||||||||||||    
T  26115359 aatggagttactgggctgatt-aagtcatgaagtcacttgtttcctaaattactaactagttac 26115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 22245939 - 22246083
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 185  Q
    |||||||||||||||| | ||||||||||| |||| ||   |||||||||||||||||| ||||||| || || ||||| |||||| |||||||||||||    
T  22245939 gagaatggagttactgagctgatttaagtcgtgaagtcaattgtttccttaattactaattagttacatcctggtttcaacagattttactcaatattag 22246038  T
Q  186 ttacgtctcctcctaagcacttactaatagggactactaactttc 230  Q
    ||| ||| ||||||| | ||| |||| ||||| | ||| ||||||    
T  22246039 ttatgtcacctcctatgtactcactactagggtccactcactttc 22246083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 21018405 - 21018584
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatggaagagaatggagttact 102  Q
    ||||||||| ||| |||||||| ||||||  ||| ||| ||| |||||| ||  |||||||||   |||||||||||     |||||||||||||||| |    
T  21018405 tgaatcttacaagcacataacacactctccttctaagtggttctacaaacgggcaaccctatccgtgtctaccttacgt---gaagagaatggagttatt 21018501  T
Q  103 gggttgatttaagtcatgaaatcgtgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 185  Q
    ||||||||||||||| |||| || | ||||||||||||||||||||||||  | |||||||| || ||  || ||||||||||    
T  21018502 gggttgatttaagtcgtgaagtcatttttccttaattactaactagttactacctgatttcaacatatgttattcaatattag 21018584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 13907728 - 13907600
Alignment:
Q  85 gaagagaatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac-ctcttgatttcagcagattctactcaata 181  Q
    |||||||||||||||||| |||||||||||||| |||| |  | ||||||||||||||||||||||||||  || | ||||||||||||| |  ||||||    
T  13907728 gaagagaatggagttactaggttgatttaagtcgtgaagtcacttgtttccttaattactaactagttactatcat-atttcagcagattttcatcaata 13907630  T
Q  182 ttagttacgtctcctcctaagcacttacta 211  Q
    |||| || ||| ||||||||| ||||||||    
T  13907629 ttaggtatgtcacctcctaagtacttacta 13907600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 6290371 - 6290539
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggagtt 99  Q
    |||||||||||||| ||||||||||||||  |||| |||||| ||||||  || | | |||||| ||||||||||||||| |   ||  |||||| ||||    
T  6290371 tgaatcttagaagtgcataacatactctccttcttggtagttctacaaacagacatctctatcagcgtctaccttaccaaggtgcgagtagaatgaagtt 6290470  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttacctcttgatttcagc 166  Q
    | || | |||||||||||||||| |  | || ||||||||||||| |||| ||||  | ||||||||||    
T  6290471 attgtgctgatttaagtcatgaagtcacttggttccttaattacttactaattactacctgatttcagc 6290539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 16245127 - 16245045
Alignment:
Q  129 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    |||||||||||| |||||||||||||| |   ||||||| ||| |||||||||||||| | ||| ||||||||| ||||||||    
T  16245127 tttccttaattattaactagttacctcctaggttcagcatattttactcaatattagtaatgtcacctcctaagtacttacta 16245045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 821065 - 820920
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaag-agaatggagtt 99  Q
    ||||||||||||||||||| || ||||||  |||  |||||| |||||| ||  | | |||||| |||||||||||| ||  || ||| |||||||||||    
T  821065 tgaatcttagaagtacatagcacactctccctctcggtagttctacaaacgggaagctctatcagcgtctaccttacgaatgtgcaagaagaatggagtt 820966  T
Q  100 actgggttgatttaagtcatgaaat--cgtgtttccttaattacta 143  Q
    |||||| ||||||||||  |||| |  | |||||||||||||||||    
T  820965 actgggctgatttaagttgtgaagtcacttgtttccttaattacta 820920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 3115824 - 3115734
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||  ||||||||||||||| |   ||||||||||| |||||||||||||| | ||| | ||||||| |||| ||| |||||    
T  3115824 tgtttccttaatatctaactagttacctcataggttcagcagattttactcaatattagtaatgtcacgtcctaagtacttgctactaggg 3115734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 5509028 - 5509118
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||| ||||  ||||||||||||||  |   ||||||||||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  5509028 tgtttccctaatctctaactagttaccttctaggttcagcagattttactcaatattagtaatgtcacctcctaagtacttactactaggg 5509118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 314704 - 314767
Alignment:
Q  89 agaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagtt 150  Q
    ||||||||||||||||  | |||||||||||||| ||   ||||||||||||||||||||||||    
T  314704 agaatggagttactggactaatttaagtcatgaagtcacttgtttccttaattactaactagtt 314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 8116372 - 8116269
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagggactactaac 226  Q
    |||||||||||||| || ||||||| ||| | | || |||||||| |||||||||||||| | ||| |||| |||| |||| ||| ||||| | ||| ||    
T  8116372 tgtttccttaattattacctagttatctcctaagttaagcagattttactcaatattagtaatgtcacctcttaagtacttgctattagggtcaactcac 8116273  T
Q  227 tttc 230  Q
    ||||    
T  8116272 tttc 8116269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 19171257 - 19171159
Alignment:
Q  135 taattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagggactactaactttcggt 233  Q
    ||||||||||||||||||||| |   ||||||||||| |||||  ||||| | | ||| ||||||||  |||||||| ||||| | |||| ||||||||    
T  19171257 taattactaactagttacctcctaggttcagcagattttactcggtattactaatgtcacctcctaaatacttactactagggtcaactagctttcggt 19171159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 2167071 - 2166991
Alignment:
Q  131 tccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    |||||||||| |||||||||||||| |   ||||||| ||| || ||||||||||| | ||| |||| |||| ||||||||    
T  2167071 tccttaattattaactagttacctcctaggttcagcaaattttagtcaatattagtaatgtcacctcttaagtacttacta 2166991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 12772324 - 12772268
Alignment:
Q  129 tttccttaattactaactagttacctcttgatttcagcagattctactcaatattag 185  Q
    |||||||||||| |||||||||||||| |   ||||| ||||| |||||||||||||    
T  12772324 tttccttaattattaactagttacctcctaggttcagtagattttactcaatattag 12772268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 41509154 - 41509238
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    |||||||||||||| |||||| ||||||| |   |||| || ||| || ||||||||||| | ||| ||||||||| ||||||||    
T  41509154 tgtttccttaattattaactaattacctcctatgttcaacaaattttattcaatattagtaatgtcacctcctaagtacttacta 41509238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 5052474 - 5052318
Alignment:
Q  1 tttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg---gaagagaatggag 97  Q
    ||||| |||||||||||||||||| ||||||   ||  |||||| ||||||  |  |||||||||| | ||||||||||||| |   || ||||||||||    
T  5052474 tttgagtcttagaagtacataacacactctcccactctgtagttctacaaacaggcaaccctatcagcatctaccttaccaaggtgcgaggagaatggag 5052375  T
Q  98 ttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
     ||||||||| |||||||||||||| |  | ||||||||||||||| ||||||||||    
T  5052374 ctactgggttaatttaagtcatgaagtcacttgtttccttaattaccaactagttac 5052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 17965561 - 17965640
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa 82  Q
    |||||||||||||||||||||| ||||||  |||||||| || ||||||  || | |||||||| |||||||||||||||    
T  17965561 tgaatcttagaagtacataacacactctccctcttagtaattctacaaacagacagccctatcagcgtctaccttaccaa 17965640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 13314406 - 13314316
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||||||||||| ||||||| |   ||||||| ||| |||||| |||| |||| ||  ||||||||| |||||||| |||||    
T  13314406 tgtttccttaattactaactaattacctcctaggttcagcatattttactcagtatttgttatgtaacctcctaagtacttactactaggg 13314316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 30486849 - 30486933
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatc--gtgtttccttaattactaactagttacctcttgatttcagcagat 170  Q
    ||||||| ||||| |||  |||||||||||||||| ||  |||||| |||||||||||| |||||||  | ||||||||||||||    
T  30486849 gagaatgaagttattggactgatttaagtcatgaagtcacgtgttttcttaattactaattagttactacctgatttcagcagat 30486933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 17977161 - 17977283
Alignment:
Q  3 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaa--tggaa-gagaatggagtt 99  Q
    ||||||||||||||||||| || ||| ||  |||  |||||| |||||| ||  | |||||||| ||||| |||||||||  || || ||||||||||||    
T  17977161 tgaatcttagaagtacatagcacactatccctctcggtagttttacaaacgggaagccctatcagcgtctgccttaccaaggtgcaaggagaatggagtt 17977260  T
Q  100 actgggttgatttaagtcatgaa 122  Q
    ||| || ||||||||||| ||||    
T  17977261 actaggctgatttaagtcgtgaa 17977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 28276199 - 28276109
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||||  ||||||||||||| | |   ||||| ||||| |||||||||||| | | ||| ||||||||| |||||||| |||||    
T  28276199 tgtttccttaatctctaactagttaccacctaggttcagtagattttactcaatattattaatgtcacctcctaagtacttactactaggg 28276109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 24584266 - 24584177
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaatagg 216  Q
    |||||| ||||||| |||||||||||||| |   ||||| ||||| |||||||||||||| | |||   ||||||| |||||||| ||||    
T  24584266 tgtttctttaattattaactagttacctcataggttcagtagattttactcaatattagtaatgtcatttcctaagtacttactactagg 24584177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 24905238 - 24905336
Alignment:
Q  59 ccctatcaacgtctaccttaccaatg---gaagagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 152  Q
    ||||||||  |||||||||||||| |   || ||||||||| ||| |||||||||||||||  |||| ||   |||||||| |||||||||||||||||    
T  24905238 ccctatcagtgtctaccttaccaaggtgcgaggagaatggacttattgggttgatttaagtggtgaagtcacttgtttcctcaattactaactagttac 24905336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 2637696 - 2637772
Alignment:
Q  134 ttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttact 210  Q
    ||||||| ||||||||||| || |   |||| |||||| |||||||||||||| | ||| ||||||||| |||||||    
T  2637696 ttaattaataactagttacatcctaggttcaacagattttactcaatattagtaatgtcacctcctaagtacttact 2637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 21315321 - 21315405
Alignment:
Q  127 tgtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttacta 211  Q
    |||||||||||| |||||||||||||||| |   ||||  ||||| |||| ||||||||| | ||| ||||| ||| ||||||||    
T  21315321 tgtttccttaatcactaactagttacctcctaggttcaatagattttactaaatattagtaatgtcacctcccaagtacttacta 21315405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 183939 - 183876
Alignment:
Q  91 aatggagttactgggttgatttaagtcatgaaat--cgtgtttccttaattactaactagttac 152  Q
    ||||||||||||||| |||||||||||||||| |  | ||||||||||||||| ||||||||||    
T  183939 aatggagttactgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagttac 183876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 156387 - 156447
Alignment:
Q  128 gtttccttaattactaactagttacctcttgatttcagcagattctactcaatattagtta 188  Q
    |||||||||||||||||||| |||| || ||||||||||| ||  ||||||||||||||||    
T  156387 gtttccttaattactaactacttacatcctgatttcagcatatgttactcaatattagtta 156447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 4513 - 4579
Alignment:
Q  88 gagaatggagttactgggttgatttaagtcatgaaatcg--tgtttccttaattactaactagttac 152  Q
    ||||||| ||||| |||| |||||||||||||||| ||   ||||||||||||||||||||||||||    
T  4513 gagaatgaagttattgggctgatttaagtcatgaagtcacttgtttccttaattactaactagttac 4579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 81292 - 81382
Alignment:
Q  127 tgtttccttaattactaactagttacctc-ttgatttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    |||||||||||||| |||||||||||||| | ||||| |||||||| |||||||||||||| | ||| ||| ||||| | |||| |||||||    
T  81292 tgtttccttaattattaactagttacctcatagattt-agcagattttactcaatattagtaatgtcaccttctaagtaattacaaataggg 81382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 55590 - 55646
Alignment:
Q  161 ttcagcagattctactcaatattagttacgtctcctcctaagcacttactaataggg 217  Q
    ||||||||||| |||||||||||||| | ||| ||||||||| |||||||| |||||    
T  55590 ttcagcagattttactcaatattagtaatgtcacctcctaagtacttactactaggg 55646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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