View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19190_low_9 (Length: 215)
Name: NF19190_low_9
Description: NF19190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19190_low_9 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1118629 - 1118415
Alignment:
| Q |
1 |
ctggtatatttcaagaaggatttagctcatctattacgagttgttaataaagcgaaacaatcaatgtttgatatttaatcgaccatgatttgtatgtata |
100 |
Q |
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| T |
1118629 |
ctggtatatttcaagaaggatttagctcatctattacgagttggtaataaagcgaaacaatcaatgtttgatatttaatcgaccatgatttgtatgtata |
1118530 |
T |
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| Q |
101 |
taatatcaaccattgattagtttatcaatgattgcattctatgaagcgtcgacacaaacaccaaatacacaccggacacgggtgataatttgaaaaaatg |
200 |
Q |
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| T |
1118529 |
taatatcaaccattgattagtttatcaatgattgcattctatgaagcgtcgacacaaacaacaaatacacaccggacacgggtgataatttgaaaaaatg |
1118430 |
T |
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| Q |
201 |
aattaattgaatgta |
215 |
Q |
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| T |
1118429 |
aattaattgaatgta |
1118415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 40826515 - 40826552
Alignment:
| Q |
175 |
gacacgggtgataatttgaaaaaatgaattaattgaat |
212 |
Q |
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| T |
40826515 |
gacactggtgataatttgagaaaatgaattaattgaat |
40826552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 10373611 - 10373578
Alignment:
| Q |
95 |
tgtatataatatcaaccattgattagtttatcaa |
128 |
Q |
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| T |
10373611 |
tgtatataatatcaaccattgatttgtttatcaa |
10373578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 28322248 - 28322281
Alignment:
| Q |
182 |
gtgataatttgaaaaaatgaattaattgaatgta |
215 |
Q |
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| T |
28322248 |
gtgataatttgagaaaatgaattaattgaatgta |
28322281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 47888008 - 47888045
Alignment:
| Q |
93 |
tatgtatataatatcaaccattgattagtttatcaatg |
130 |
Q |
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| T |
47888008 |
tatgcatataatatcaaccattgatttgtttatcaatg |
47888045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 2517107 - 2517147
Alignment:
| Q |
175 |
gacacgggtgataatttgaaaaaatgaattaattgaatgta |
215 |
Q |
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| T |
2517107 |
gacaccggtaataatttgagaaaatgaattaattgaatgta |
2517147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 24362335 - 24362363
Alignment:
| Q |
187 |
aatttgaaaaaatgaattaattgaatgta |
215 |
Q |
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| T |
24362335 |
aatttgaaaaaatgaattaattgaatgta |
24362363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 34986794 - 34986758
Alignment:
| Q |
175 |
gacacgggtgataatttgaaaaaatgaattaattgaa |
211 |
Q |
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||||||||| | ||||||||||||||||||||||||| |
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| T |
34986794 |
gacacgggtaaaaatttgaaaaaatgaattaattgaa |
34986758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 15936371 - 15936343
Alignment:
| Q |
187 |
aatttgaaaaaatgaattaattgaatgta |
215 |
Q |
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| T |
15936371 |
aatttgaaaaaatgaattaattgaatgta |
15936343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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