View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19191_low_2 (Length: 466)
Name: NF19191_low_2
Description: NF19191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19191_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 26609273 - 26608825
Alignment:
| Q |
1 |
aaggaaacaaagaaacaatactcgggtggactatttcaaaacccaatgatgcacaaaagatgcataatcaattgtcttattaaaa-ccttatttgtaaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
26609273 |
aaggaaacaaagaaacaatactcgggtggactatgtcaaagcccaatgatgcacaaaagatgcataatcaattgtcttattaaaaaccttatctgtaaaa |
26609174 |
T |
|
| Q |
100 |
tttagtgggataaaaccaaggtgaagagaaaacgagggtaatgctcaacaaataaaaagttaacaaaatttatgctcaggtagatcaattatttcgtagt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609173 |
tttagtgggataaaaccaaggtgaagagaaaacgagtgtaatgctcaacaaataaaaagttaacaaaatttatgctcaggtagatcaattatttcgtagt |
26609074 |
T |
|
| Q |
200 |
aaatacattcaagatactatgaggaatagcctcccaccattggtaattgttcaaatgatgcgaaggttggcaagcttgttagcgcattgagtgacttctc |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609073 |
aaatacattcaagatattatgaggaatagcctcccaccattggtaattgttcaaatgatgcgaaggttggcaagcttgttagcgcattgagtgacttctc |
26608974 |
T |
|
| Q |
300 |
tataaatgtgagacacggtgaaagttatctttatgtgaaagctacgcaatcgagttatctattttaaaattcacaagaacaatagtatcaggtcatgaaa |
399 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26608973 |
tataaatgtgagacacgatgaaagttatctttatgtgaaagctacgcaatcgagtcatctattttaaaattcacaagaacaatggtatcaggtcatgaaa |
26608874 |
T |
|
| Q |
400 |
gcaagattgatcaatcaaaagttagattcaagttatgagacaatgacat |
448 |
Q |
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| T |
26608873 |
gcaagattgatcaatcaaaagttagattcaagttatgagacaatgacat |
26608825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 26621834 - 26621386
Alignment:
| Q |
1 |
aaggaaacaaagaaacaatactcgggtggactatttcaaaacccaatgatgcacaaaagatgcataatcaattgtcttatta----aaaccttatttgta |
96 |
Q |
| |
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||||||| |||||| ||||||||||||||||| |||||| || |||||| |||||| ||||||||||||||||||| | |||||||| | || |
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| T |
26621834 |
aaggaaatgaagaaagaatactcgggtggactagaccaaaactgaaggatgcataaaagaagcataatcaattgtcttataattaaaaaccttacctata |
26621735 |
T |
|
| Q |
97 |
aaatttagtgggataaaaccaaggtgaagagaaaacgagggtaatgctcaac--aaataaaaagttaacaaaatttatgctcaggtagatcaattatttc |
194 |
Q |
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||| ||| || ||||||||||||||||||||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||| ||||||||||||| ||| |
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| T |
26621734 |
aaacttactgagataaaaccaaggtgaagagaaaccgagtgtagtgctcaacccaaacaaaaagttagcaaaatttatgctaaggtagatcaattcattc |
26621635 |
T |
|
| Q |
195 |
gtagtaaatacattcaagatactatgaggaatagcctcccaccattggtaattgttcaaatgatgcgaaggttggcaagcttgttagcgcattgagtgac |
294 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
26621634 |
atagtaaatacattcaagaaactatgaggaatagcctcccaccattggtagttgttcaaatggggtgaaggttggcaagcttgtgagcgcattgagtgac |
26621535 |
T |
|
| Q |
295 |
ttctctataaatgtgagacacggtgaaagttatctttatgtgaaagctacgcaatcgagttatctattt-taaaattcacaagaacaatagtatcaggtc |
393 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| | |||| ||||| | | |||||||| |||||||||||||||||||||||| || | |
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| T |
26621534 |
ttctctataaatgtgagacacgatgaaagttatctttatgtgagacctacacaatcaaatcatctatttctaaaattcacaagaacaatagtat-gggac |
26621436 |
T |
|
| Q |
394 |
atgaaagcaagattgatcaatcaaaagttagattcaagttatgagacaat |
443 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
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|
| T |
26621435 |
atgaaagcaagattgatcaattaaaagatagattcaagtcatgagacaat |
26621386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 141 - 448
Target Start/End: Complemental strand, 26619709 - 26619393
Alignment:
| Q |
141 |
tgctcaacaaataaaaagttaacaaaatttatgctcaggtagatcaattatttcgtagtaaatacattcaagata------ctatgaggaatagcctccc |
234 |
Q |
| |
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||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26619709 |
tgctcaataaacaaaaagttaactaaatttatgctcaggtagatcaattctttcgtagtaaatacattcaagataataatactatgaggaatagcctccc |
26619610 |
T |
|
| Q |
235 |
accattggtaattgttcaaatgatgcgaaggttggcaagcttgttagcgcattgagtgactt--ctctataaatgtgagacacggtgaaagttatcttta |
332 |
Q |
| |
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||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
26619609 |
accattgacaattgttaaagtgatgcaaaggttggcaagcttgttagcgcattgagtgacttctctctataaatgtgagacacgatgaaagttatcttta |
26619510 |
T |
|
| Q |
333 |
tgtgaaagctacgcaatcgagttatctattt-taaaattcacaagaacaatagtatcaggtcatgaaagcaagattgatcaatcaaaagttagattcaag |
431 |
Q |
| |
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||||| ||||| ||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||| |
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| T |
26619509 |
tgtgagagctatgcaattgagtcatctatttctaaaattcacaagaacaatagtattgggacatgaaagcaagattaatcaatcaagagttagattcaag |
26619410 |
T |
|
| Q |
432 |
ttatgagacaatgacat |
448 |
Q |
| |
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| ||||||||||||||| |
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|
| T |
26619409 |
tcatgagacaatgacat |
26619393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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